View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_5 (Length: 620)
Name: NF20722_low_5
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_5 |
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| [»] chr4 (5 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 575; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 575; E-Value: 0
Query Start/End: Original strand, 1 - 620
Target Start/End: Original strand, 37697403 - 37698022
Alignment:
| Q |
1 |
gagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggaga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
37697403 |
gagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatatttgaaagagtgtttggtatctcgccggaga |
37697502 |
T |
|
| Q |
101 |
tgctggtatggtatggctgagggtgaggtactcaagattggtgagtttggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagag |
200 |
Q |
| |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697503 |
tgctggtatggtatggctgagggtgaggtaatcaagattggtgagtttggagatggacggtgggatagtgccgacgaggttggggatgcgggagagagag |
37697602 |
T |
|
| Q |
201 |
aagtcgtcaaggaaagggaggttagtgatggagggtggaaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagt |
300 |
Q |
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|| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697603 |
aaatcgtcaagaaaagggaggttagtgatggagggtggaaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggtctgagt |
37697702 |
T |
|
| Q |
301 |
cgcatgagacacccttccatttgtcgttgcagcaatcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggag |
400 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697703 |
cgcatgagacacccttccatttgtcgttgcagcagtcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggag |
37697802 |
T |
|
| Q |
401 |
taaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatgatgaaacgttgtgtggttatgattaagagaagtagtatgcatgagaggaag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37697803 |
taaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatgatgaagcgttgtgtggttatgattaagagaagtagtatgcatgagaggaag |
37697902 |
T |
|
| Q |
501 |
tgttgcatggttgatgctatcatcttgttcttctattcatttgcttgttgctgttgggacatatatataggcatatnnnnnnntagatgatttagtggtg |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37697903 |
tgttgcatggttgatgctatcatcttgttcttctattcatttgcttgttgctgttgggacatatatataggcatataaaaaaatagatgatttagtggtg |
37698002 |
T |
|
| Q |
601 |
agatgaactaatttactttt |
620 |
Q |
| |
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|||||||||||||||||||| |
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| T |
37698003 |
agatgaactaatttactttt |
37698022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 13 - 450
Target Start/End: Complemental strand, 38013671 - 38013229
Alignment:
| Q |
13 |
gggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggt |
112 |
Q |
| |
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|||||||||||||| |||||||||||| ||||||||| ||||| || ||||| |||| ||| || |||||||||||||||||||||||| |||| || |
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| T |
38013671 |
gggaggggaccagttagtttgttgttgtagaagtcgatgcgtaagagcgttttgatctgtgagagggtgtttggtatctcgccggagatgttggt---gt |
38013575 |
T |
|
| Q |
113 |
atggctgagggtgaggtactcaagattggtgagtttggagatggacggtggga---tagtgccgacgaggttggggatgcgggagagagagaagtcgtca |
209 |
Q |
| |
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|| |||||||||||||||| ||| || |||||||| ||||||||||||||| |||||||||| |||||||||||| |||||||||||| | | |
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| T |
38013574 |
at--ctgagggtgaggtacttaagttt--tgagtttgaagatggacggtgggaggatagtgccgacaaggttggggatgtgggagagagagagtaaggta |
38013479 |
T |
|
| Q |
210 |
aggaaagggaggttagtgatggagggtggaaatggaacaggtttagggaggttgaggtcgtcgagaccaaggttggcgactcggt------------ctg |
297 |
Q |
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|||||||||||||||| |||||||||||||| ||||||||||||||| |||| |||| |||||| ||||||| | ||||||| ||| |
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| T |
38013478 |
aggaaagggaggttagcgatggagggtggaattggaacaggtttaggtaggtcaaggttctcgagatcaaggttttctactcggttggtttgtgtgtctg |
38013379 |
T |
|
| Q |
298 |
agtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgtttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttg |
397 |
Q |
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||| |||||||||||| |||||||||| ||||||||| || ||| ||||||||||||||||||||||| | | |||||||||||||||||||||||||| |
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| T |
38013378 |
agttgcatgagacacctttccatttgttgttgcagcagtc--tgt-gtttggatcccatgaagagagttggctagggttgccaaattcttttttgatttg |
38013282 |
T |
|
| Q |
398 |
gagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatga |
450 |
Q |
| |
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||||| || | |||||||| | | ||||| ||||| ||| ||||||| |||| |
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| T |
38013281 |
gagtagggttcttttgtcatctgggttgcagttttctgagtgtgaaggaatga |
38013229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 350 - 450
Target Start/End: Complemental strand, 37993802 - 37993702
Alignment:
| Q |
350 |
atcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaaggtatg |
449 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||||||||||| | | || || |||||||||| ||||||||| ||| ||||||||||| ||| |
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| T |
37993802 |
atcccatgaagagagtttggttgggttgccaaattgttttttgatttgaaagagggtttttttgtcatgtggattgcattgttctgagagtgaaggaatg |
37993703 |
T |
|
| Q |
450 |
a |
450 |
Q |
| |
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| |
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| T |
37993702 |
a |
37993702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 1 - 107
Target Start/End: Complemental strand, 37994149 - 37994043
Alignment:
| Q |
1 |
gagagtgaagcagggaggggaccagtgagtttgttgttggtgaagtcgatccgtaatagggttttcatctttgaaagagtgtttggtatctcgccggaga |
100 |
Q |
| |
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|||||||| || ||||||||||||||||||||||||| | ||| |||||| || ||||||||| |||| ||| |||||||| |||||||||||||||| |
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| T |
37994149 |
gagagtgatgcggggaggggaccagtgagtttgttgtcgctgatgtcgatggttactagggttttgatctctgagagagtgttaggtatctcgccggaga |
37994050 |
T |
|
| Q |
101 |
tgctggt |
107 |
Q |
| |
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|| |||| |
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| T |
37994049 |
tgttggt |
37994043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 346 - 443
Target Start/End: Complemental strand, 37989616 - 37989519
Alignment:
| Q |
346 |
ttggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttctttgtcatgttgattgcatttttcggagagtgaa |
443 |
Q |
| |
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||||||||||||||||||||| | | ||||||||||||||||| || |||||||||| || | |||||||| | | ||||| ||||| ||| ||||| |
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|
| T |
37989616 |
ttggatcccatgaagagagttggctagggttgccaaattctttctttatttggagtagggttcttttgtcatctgggttgcagttttctgagtgtgaa |
37989519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 57 - 412
Target Start/End: Complemental strand, 25326518 - 25326162
Alignment:
| Q |
57 |
tagggttttcatctttgaaagagtgtttggtatctcgccggagatgctggtatggtatggctgagggtgaggtactcaagattggtgagtttggagatgg |
156 |
Q |
| |
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||||||||| |||| ||| || | |||||||||||||||||||||||| || | |||| | ||||| |||||| ||||||||||||||||||| |
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| T |
25326518 |
tagggttttaatctgtgagagtgagtttggtatctcgccggagatgcttgtgccg-----ctgatgatgaggacctcaagtttggtgagtttggagatgg |
25326424 |
T |
|
| Q |
157 |
acggtgggatagtgccgacgaggttggggatgcgggagagagagaagtcgtcaaggaaagggaggttagtg---atggagggtggaaatggaacaggttt |
253 |
Q |
| |
|
| || ||||||||||| ||||||||||||||| | || ||||| || | |||||||||||||||| ||||||||||||| | |||| |||| |
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|
| T |
25326423 |
aaggcgggatagtgccaacgaggttggggatgttgtcgatagagagaaagtttatgaaagggaggttagtgaatatggagggtggaatttgaacgtgttt |
25326324 |
T |
|
| Q |
254 |
agggaggttgaggtcgtcgagaccaaggttggcgactcgg------tctgagtcgcatgagacacccttccatttgtcgttgcagcaatcattgttgttt |
347 |
Q |
| |
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||||||||||||||| |||| |||| ||| ||| ||| | |||||||||| |||||| | |||||||| | ||||||| ||| |||| || |
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| T |
25326323 |
ggggaggttgaggtcgaagagatcaagcttgttgacacggtaggtttgtgagtcgcataggacaccttcccatttgtggctgcagcagtca--gttg-tt |
25326227 |
T |
|
| Q |
348 |
ggatcccatgaagagagtttggttgggttgccaaattcttttttgatttggagtaaggcttcttt |
412 |
Q |
| |
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|| | ||||||||| |||||||||||| |||| | ||||||||| |||| |||| ||||||||| |
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| T |
25326226 |
gggttccatgaagaaagtttggttgggctgcctagttcttttttaattttcagtagggcttcttt |
25326162 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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