View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20722_low_9 (Length: 470)
Name: NF20722_low_9
Description: NF20722
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20722_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 12 - 455
Target Start/End: Complemental strand, 10462922 - 10462479
Alignment:
| Q |
12 |
aattctctgtataccatctgtgagatggaagtttcttgtttaagtcctactagtgcgctcattataaattgaattcaatcaatcttcctacattttttcc |
111 |
Q |
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| T |
10462922 |
aattctctgtataccatctgtgagatggaagtttcttgtttaagtcctactagtgcgctcattataaattgaattcaatcaatcttcctacattttttcc |
10462823 |
T |
|
| Q |
112 |
aaatctgagttaattatcagttgaatttcatgatgaatttttaacaattgggtacaattccataacatttgtatattttgttcttgtccggtacaattcc |
211 |
Q |
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| T |
10462822 |
aaatctgagttaattatcagttgaatttcatgatgaatttttaacaattgggtacaattccataacatttgtatattttgttcttgtccggtacaattcc |
10462723 |
T |
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| Q |
212 |
atatagccgaacactaaaattgataagtccagttttttgtatgtggaagaatagttttttgtattctccctccctgatttatgcaagctggccnnnnnnn |
311 |
Q |
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| T |
10462722 |
atatagccgaacactaaaattgataagtccagttttttgtatgtggaagaatagttttttgtattctccctccctgatttatgcaagctggcctatatat |
10462623 |
T |
|
| Q |
312 |
nnnnnnnnnnnnnnnnnggagttgtaattttgacctttttaggcacacatgatattaaatcctgatcggctacacctattaccatttgtctgatattgat |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10462622 |
ttatttatttatattttggagttgtaattttgacctttttaggcacacatgatattaaatcctgatcggctacacctattaccatttgtctgatattgat |
10462523 |
T |
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| Q |
412 |
aatattaattatttcctaggaaggataacaaagatatagtattt |
455 |
Q |
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| T |
10462522 |
aatattaattatttcctaggaaggataacaaagatatagtattt |
10462479 |
T |
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