View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20723_high_1 (Length: 362)
Name: NF20723_high_1
Description: NF20723
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20723_high_1 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 354; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 362
Target Start/End: Complemental strand, 35542321 - 35541960
Alignment:
| Q |
1 |
cgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaa |
100 |
Q |
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| T |
35542321 |
cgtaatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaa |
35542222 |
T |
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| Q |
101 |
tgaaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagtt |
200 |
Q |
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| T |
35542221 |
tgaaacattgttaatagcccattttgtgaaactgccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagtt |
35542122 |
T |
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| Q |
201 |
cccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtgagtttgggataacagaaaaga |
300 |
Q |
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| T |
35542121 |
cccattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtgagtttgggataaaagaaaaga |
35542022 |
T |
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| Q |
301 |
cagagtttgttttgtttgttaaaccttgtggcgtgtttggttttctacctctaacaccgatt |
362 |
Q |
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| T |
35542021 |
cagagtttgttttgtttgttaaaccttgtggcgtgtttggttttctacctctaacaccgatt |
35541960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 3 - 280
Target Start/End: Complemental strand, 35509624 - 35509347
Alignment:
| Q |
3 |
taatcctttggaaatgtctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatg |
102 |
Q |
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| T |
35509624 |
taatccattggaaatctctctggtggtggatttttatcaaatgtattttttaggttaaatttaattgatcctaagtaaggtgttgttggcaatgttaatg |
35509525 |
T |
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| Q |
103 |
aaacattgttaatagcccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagttcc |
202 |
Q |
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| T |
35509524 |
aaacattgttaatagcccatttagtgaaactaccgattttgttttgtgtattgaggaggtgaatagtgcggtgtgaggattttggtggctgtggatttcc |
35509425 |
T |
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| Q |
203 |
cattttggaaatgatttgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggtga |
280 |
Q |
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| T |
35509424 |
cattttggaaatgatttgttttgtgaatgctttgctgtgatcggtatcgttccataatggtgtgactggtggtggtga |
35509347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 19 - 278
Target Start/End: Complemental strand, 35527805 - 35527546
Alignment:
| Q |
19 |
tctctggtggtggatttttatcaaatgtattgtttagtttatatttgattgctcctaagtaaggtgttgttggtaatgttaatgaaacattgttaatagc |
118 |
Q |
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| T |
35527805 |
tctctggtggtggatttctatcaaatgtattgtttagtttatatttgattgctcctaagtacggtgttgttggcaatgttaatgaaacattgttaatagc |
35527706 |
T |
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| Q |
119 |
ccattttgtgaaactaccgattcggttttgtgtgttgaggagtagaatcctgcggtgtgagaattttggtggctgtggagttcccattttggaaatgatt |
218 |
Q |
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| T |
35527705 |
ccatttaatgaaattacctattttgctttgtgtgttgaggaggtaaatcaagcggtctgcggtttttggtggctgtggtgttcccattctggaaatgatt |
35527606 |
T |
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| Q |
219 |
tgttttgtgaatgctttgctatgtttggtatcattccataatggagtgattggtggtggt |
278 |
Q |
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| T |
35527605 |
tgttttgtgaattctttgctgcgctcgatatcgtcccataagggagtgattggtggtggt |
35527546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 362
Target Start/End: Complemental strand, 35541922 - 35541885
Alignment:
| Q |
325 |
cttgtggcgtgtttggttttctacctctaacaccgatt |
362 |
Q |
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||||||| ||||| |||||||||||||||||||||||| |
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| T |
35541922 |
cttgtggtgtgttaggttttctacctctaacaccgatt |
35541885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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