View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20724_high_5 (Length: 291)
Name: NF20724_high_5
Description: NF20724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20724_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 106 - 274
Target Start/End: Complemental strand, 44532409 - 44532237
Alignment:
| Q |
106 |
catgaagctaggta---gttcatacctaaaagagtgaccaataaataagaaacacacaaagtaataaaaattagatggaaggatgaaattaacctaa-aa |
201 |
Q |
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| T |
44532409 |
catgaagctaggtattagttcatacctaaaagagtgaccaataaataagaaacacacaaagtaataaaaattagatggaaggatgaaattaacctaaaaa |
44532310 |
T |
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| Q |
202 |
aagttgaagaagatgaactcagcattaaaattaattaatttggttaataaaattataaactatgattgagttc |
274 |
Q |
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| T |
44532309 |
aagttgaagaagatgaactcagcattaaaattaattaatttggttaataaaattataaactatgattgagttc |
44532237 |
T |
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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 44532515 - 44532485
Alignment:
| Q |
1 |
tttgtgatgaggaaaaatatatgattacacc |
31 |
Q |
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| T |
44532515 |
tttgtgatgaggaaaaatatatgattacacc |
44532485 |
T |
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