View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20724_low_1 (Length: 490)
Name: NF20724_low_1
Description: NF20724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20724_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 17 - 403
Target Start/End: Complemental strand, 3529224 - 3528838
Alignment:
| Q |
17 |
aacattgaagcacaaacaaagttggtggttgatccatgtatggatacttgtatcgaaagtcttcctcccgatatggaagtctgacgacatttcttactga |
116 |
Q |
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| T |
3529224 |
aacattgaagcacaaacaaagttggtggttgatccatgtatggatacttgtatcgaaagtcttccttccgatatggaagtctgacgacatttcttattga |
3529125 |
T |
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| Q |
117 |
ttgttgttaacaacaatacaagtatatatgcagaatcacaattcagttcgtgcagtgatatcaaatttagagctattgtgggaacacacttgagctcgtt |
216 |
Q |
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| T |
3529124 |
ttgttgttaacaacaatacaattatatatgcagaatcacaattcagttcgtgcagtgatatcaaatttagagctattgtgggaacacgcttgagctcgtt |
3529025 |
T |
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| Q |
217 |
gatttgaaggaatttgtaaggtgtacaagccaaggcgcttactcatgtggataaaaacaagagaaagaaacattttctactttagaagcaagtcatgaaa |
316 |
Q |
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| T |
3529024 |
gattcgaaggaatttgtaaggtgtacaagccaaggcgcttactcatgtggataaaaacaagagaaagaaacattttctactttagaatcaagtcatgaaa |
3528925 |
T |
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| Q |
317 |
agagcaaacaatgatggcaaaaatgaaggnnnnnnnggaacaaggattgtgacatgttctgtttgtgggatttaaataaaatggtat |
403 |
Q |
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| T |
3528924 |
agagcaaacaatgatggcaaaaatgaaggaaaaaaaggaacaaggattgtgacatgttctgttcgtgggatttaaataaaatggtat |
3528838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 395 - 485
Target Start/End: Complemental strand, 3528012 - 3527923
Alignment:
| Q |
395 |
aaatggtattgattctcttcaaaattggtaggtctttcttagtcatcatcctcagaatggtgtatgacttttctaaaatgcctttgctact |
485 |
Q |
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| T |
3528012 |
aaatggtattgattctcttcaaa-ttgataggtctttcttagtcatcatcctcagaagggtgtatgtcttttctaaaatgcctttggtact |
3527923 |
T |
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