View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20724_low_2 (Length: 478)

Name: NF20724_low_2
Description: NF20724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20724_low_2
NF20724_low_2
[»] chr8 (26 HSPs)
chr8 (1-337)||(43393325-43393661)
chr8 (278-388)||(43393662-43393772)
chr8 (380-478)||(43393807-43393905)
chr8 (309-378)||(7878448-7878517)
chr8 (320-388)||(7918713-7918781)
chr8 (303-364)||(16162854-16162915)
chr8 (319-375)||(1664452-1664508)
chr8 (319-375)||(1889066-1889122)
chr8 (316-375)||(24326114-24326173)
chr8 (303-373)||(9700086-9700156)
chr8 (303-369)||(43504840-43504906)
chr8 (306-375)||(26410363-26410432)
chr8 (304-388)||(29699343-29699425)
chr8 (327-387)||(44401631-44401691)
chr8 (309-388)||(2487929-2488008)
chr8 (312-375)||(6950405-6950468)
chr8 (304-375)||(43045641-43045711)
chr8 (310-372)||(8629199-8629261)
chr8 (309-375)||(10062062-10062128)
chr8 (398-443)||(11188249-11188295)
chr8 (318-388)||(30191071-30191141)
chr8 (312-369)||(34849193-34849250)
chr8 (303-336)||(43717849-43717882)
chr8 (401-444)||(1112786-1112830)
chr8 (315-375)||(3953885-3953945)
chr8 (309-373)||(14926903-14926967)
[»] chr1 (27 HSPs)
chr1 (309-388)||(4549462-4549541)
chr1 (306-388)||(5157142-5157224)
chr1 (309-373)||(7217995-7218059)
chr1 (309-365)||(21002248-21002304)
chr1 (309-375)||(6659763-6659829)
chr1 (309-375)||(28467230-28467296)
chr1 (327-388)||(4118810-4118871)
chr1 (307-388)||(18327065-18327146)
chr1 (326-375)||(44422782-44422831)
chr1 (304-365)||(46852137-46852198)
chr1 (309-369)||(6292581-6292641)
chr1 (307-375)||(9507314-9507382)
chr1 (303-375)||(32515356-32515428)
chr1 (19-95)||(38081642-38081718)
chr1 (316-375)||(31517668-31517727)
chr1 (309-375)||(3319867-3319933)
chr1 (306-388)||(22416829-22416911)
chr1 (309-375)||(26866396-26866462)
chr1 (19-77)||(37209838-37209896)
chr1 (347-388)||(23373272-23373313)
chr1 (314-375)||(38170616-38170677)
chr1 (309-378)||(52190209-52190278)
chr1 (301-337)||(1730980-1731016)
chr1 (398-437)||(13037794-13037834)
chr1 (308-388)||(15581324-15581404)
chr1 (330-374)||(15709933-15709977)
chr1 (313-365)||(35017675-35017727)
[»] chr7 (16 HSPs)
chr7 (309-385)||(31341208-31341284)
chr7 (19-92)||(48025415-48025488)
chr7 (309-378)||(1418499-1418568)
chr7 (305-375)||(3836600-3836670)
chr7 (310-375)||(529445-529510)
chr7 (302-387)||(8427084-8427169)
chr7 (313-378)||(10079264-10079329)
chr7 (303-388)||(12234804-12234889)
chr7 (19-92)||(18699956-18700029)
chr7 (309-378)||(30751599-30751668)
chr7 (309-369)||(23214944-23215004)
chr7 (353-388)||(48157085-48157120)
chr7 (304-365)||(389931-389992)
chr7 (400-444)||(33894555-33894600)
chr7 (400-443)||(5373157-5373201)
chr7 (304-388)||(46082106-46082190)
[»] chr4 (30 HSPs)
chr4 (309-375)||(19429391-19429457)
chr4 (307-388)||(18628472-18628553)
chr4 (309-388)||(11264371-11264450)
chr4 (19-94)||(27382041-27382116)
chr4 (32-95)||(30617630-30617693)
chr4 (309-375)||(39178187-39178253)
chr4 (309-375)||(44320032-44320098)
chr4 (310-378)||(1017108-1017176)
chr4 (340-388)||(19394715-19394763)
chr4 (301-388)||(2996643-2996730)
chr4 (353-388)||(6987706-6987741)
chr4 (309-372)||(7367975-7368038)
chr4 (307-378)||(25896864-25896935)
chr4 (309-375)||(9316608-9316674)
chr4 (303-369)||(22772391-22772457)
chr4 (309-375)||(42866151-42866217)
chr4 (309-366)||(1075550-1075607)
chr4 (393-437)||(4191664-4191709)
chr4 (303-336)||(19394864-19394897)
chr4 (309-378)||(20935945-20936014)
chr4 (305-338)||(22845623-22845656)
chr4 (398-442)||(40709475-40709520)
chr4 (308-388)||(14172041-14172121)
chr4 (303-369)||(23319943-23320006)
chr4 (304-388)||(27123268-27123352)
chr4 (303-339)||(27329991-27330027)
chr4 (341-385)||(41097209-41097253)
chr4 (319-363)||(46187840-46187884)
chr4 (398-437)||(47970248-47970288)
chr4 (19-95)||(54877349-54877424)
[»] chr3 (20 HSPs)
chr3 (297-387)||(24158425-24158515)
chr3 (303-369)||(41057244-41057310)
chr3 (309-388)||(3775772-3775851)
chr3 (303-364)||(44014713-44014774)
chr3 (303-375)||(22667486-22667558)
chr3 (303-375)||(22724125-22724197)
chr3 (19-95)||(50129058-50129134)
chr3 (22-92)||(26042273-26042343)
chr3 (303-375)||(50015969-50016041)
chr3 (309-388)||(2100100-2100179)
chr3 (320-375)||(12985295-12985350)
chr3 (309-384)||(32663712-32663787)
chr3 (309-388)||(49845461-49845540)
chr3 (309-388)||(21574560-21574641)
chr3 (329-375)||(45590734-45590780)
chr3 (306-375)||(20194951-20195020)
chr3 (309-342)||(20880592-20880625)
chr3 (315-388)||(37273204-37273277)
chr3 (303-364)||(53891810-53891871)
chr3 (303-375)||(24603667-24603739)
[»] chr5 (21 HSPs)
chr5 (301-375)||(40335786-40335860)
chr5 (297-376)||(10391424-10391503)
chr5 (319-369)||(444011-444061)
chr5 (306-364)||(10771806-10771864)
chr5 (309-387)||(11297117-11297195)
chr5 (319-388)||(11457168-11457237)
chr5 (307-376)||(14980591-14980660)
chr5 (305-374)||(31723889-31723958)
chr5 (309-385)||(39257315-39257391)
chr5 (313-388)||(34117473-34117547)
chr5 (306-388)||(11296917-11296999)
chr5 (309-375)||(32849261-32849327)
chr5 (309-375)||(37954770-37954836)
chr5 (306-351)||(11615572-11615617)
chr5 (399-443)||(40048374-40048419)
chr5 (305-337)||(7674768-7674800)
chr5 (306-370)||(19177533-19177597)
chr5 (19-95)||(19521435-19521510)
chr5 (320-388)||(32172723-32172791)
chr5 (393-437)||(36542382-36542426)
chr5 (303-339)||(41535500-41535536)
[»] chr2 (21 HSPs)
chr2 (303-388)||(9996808-9996893)
chr2 (309-388)||(15120253-15120332)
chr2 (300-367)||(15370235-15370302)
chr2 (301-388)||(28803443-28803530)
chr2 (301-338)||(37434446-37434483)
chr2 (306-369)||(43199701-43199765)
chr2 (309-376)||(757531-757598)
chr2 (309-388)||(22878168-22878247)
chr2 (309-375)||(6547972-6548038)
chr2 (309-375)||(11513979-11514045)
chr2 (347-385)||(29429716-29429754)
chr2 (22-96)||(37980334-37980408)
chr2 (309-374)||(13866962-13867027)
chr2 (399-443)||(34054995-34055040)
chr2 (303-375)||(40667490-40667563)
chr2 (309-375)||(40837358-40837420)
chr2 (400-443)||(11393749-11393793)
chr2 (400-443)||(11410410-11410454)
chr2 (306-386)||(41032873-41032953)
chr2 (309-365)||(41170703-41170759)
chr2 (307-371)||(42852621-42852685)
[»] scaffold0199 (1 HSPs)
scaffold0199 (319-375)||(6893-6949)
[»] scaffold0141 (1 HSPs)
scaffold0141 (302-387)||(9692-9777)
[»] chr6 (8 HSPs)
chr6 (327-388)||(32917267-32917328)
chr6 (354-388)||(2027764-2027798)
chr6 (393-437)||(2727956-2728001)
chr6 (304-388)||(2460067-2460151)
chr6 (399-443)||(5551394-5551438)
chr6 (303-351)||(12111074-12111122)
chr6 (309-373)||(24838674-24838738)
chr6 (398-437)||(31461608-31461648)
[»] scaffold0590 (1 HSPs)
scaffold0590 (393-443)||(1168-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (393-443)||(2756-2807)


Alignment Details
Target: chr8 (Bit Score: 317; Significance: 1e-179; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 337
Target Start/End: Original strand, 43393325 - 43393661
Alignment:
Q  1 gcacaagaaaaaacttttaagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaacttgaagt 100  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393325 gcacaagaaaaaacttttaagataaaattttaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaacttgaagt 43393424  T
Q  101 tagcatttcccataaataaatcacacacaatcaacatgcagaagaaaatttaaggaataaccaaagtaactatctatgtgaaattttgaagattagcaca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  43393425 tagcatttcccataaataaatcacacacaatcaacatgcagaagaaaatttaaggaataaccaaagtaactatctatgtgaaattttaaagattagcaca 43393524  T
Q  201 aagaaaatcccgaaatttactagagcacatacaactacaggtaacaacgccagcttttacaccagaggctaacataagaatataattagcaacaaccacc 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  43393525 aagaaaatcccgaaatttactagagcacatacaactacaggtaacaacgccagcttttacaccagaggctaacataagtatataattagcaacaaccacc 43393624  T
Q  301 aaggcctatttggattggcttatttaagcttatctac 337  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  43393625 aaggcctatttcgattggcttatttgagcttatctac 43393661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 278 - 388
Target Start/End: Original strand, 43393662 - 43393772
Alignment:
Q  278 gaatataattagcaacaaccaccaaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatag 377  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393662 gaatataattagcaacaaccaccaaggcctatttggattgacttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatag 43393761  T
Q  378 atacaacttat 388  Q
    |||||||||||    
T  43393762 atacaacttat 43393772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 380 - 478
Target Start/End: Complemental strand, 43393905 - 43393807
Alignment:
Q  380 acaacttatcttatatcttataagtgcttatgtatagctgtttctataacaaaagatacaataagctcaaaggggtttcttttaagctataagcttttt 478  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393905 acaacttatcttatatcttataagtgcttatgtatagctgtttctataacaaaagatacaataagctcaaaggggtttcttttaagctataagcttttt 43393807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 7878448 - 7878517
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||||||||| |||| ||||||||||||| ||  |||  ||||||||||||||||||||||||||    
T  7878448 tttggattggcttatctaagtttatctacttgcataagaactaatgagactgtttgggagagcttataga 7878517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 320 - 388
Target Start/End: Original strand, 7918713 - 7918781
Alignment:
Q  320 ttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||| |||||||||| ||| |||||||| |||||||||||||||||||||||  | |||||||||    
T  7918713 ttatttaaacttatctactagcataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 7918781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Complemental strand, 16162915 - 16162854
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttg 364  Q
    ||||| ||||||||||||||||| || ||||||||| ||| |||||||| ||||||||||||    
T  16162915 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttg 16162854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 1664508 - 1664452
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||| || ||||||||| ||| |||||||| |||||||||||||||||||||||    
T  1664508 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 1664452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 375
Target Start/End: Original strand, 1889066 - 1889122
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||| || ||||||||| ||| |||||||||||||||||||||||| |||||||    
T  1889066 cttatttgagtttatctactggcataaacacttttgagactgtttgggaaagcttat 1889122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 24326173 - 24326114
Alignment:
Q  316 tggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||| |||| |||||||||||| ||| || ||||| |||||||||||||||||||||||    
T  24326173 tggctaatttgagcttatctactggcataagcacttgtgagactgtttgggagagcttat 24326114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 373
Target Start/End: Complemental strand, 9700156 - 9700086
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctt 373  Q
    ||||| ||||||||  ||||||| |||||||||||| ||| |||||||| ||||||| |||| ||||||||    
T  9700156 ggcctgtttggattaacttatttgagcttatctactagcataaacacttgtgagactatttgagagagctt 9700086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 43504906 - 43504840
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    |||||||| ||||||||||||||||||||||||||| ||  || ||||| || |||||||| |||||    
T  43504906 ggcctattaggattggcttatttaagcttatctactggcttaagcacttgtgtgactgtttcggaga 43504840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 306 - 375
Target Start/End: Complemental strand, 26410432 - 26410363
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||||||| ||||| ||||| |||  || || ||||| |||||||| ||||||||||||||    
T  26410432 ctatttggattggcttagttaagtttatcaactgacataagcacttctgagactgcttgggagagcttat 26410363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 29699425 - 29699343
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||| ||||||||| ||||||| ||||| ||| || ||| ||||| ||  |||||||||||||||| |||||||| |||||||||    
T  29699425 gcctgtttggattgacttatttgagcttctctgctggcataaacagtt--gagactgtttgggagaacttatagaaacaacttat 29699343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 327 - 387
Target Start/End: Complemental strand, 44401691 - 44401631
Alignment:
Q  327 agcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactta 387  Q
    |||||||||||| ||| | |||||| ||||||||||||||| || ||||||| ||||||||    
T  44401691 agcttatctactggcatatacacttgtgagactgtttgggatagtttatagaaacaactta 44401631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 2487929 - 2488008
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||| || | |||||||  || || ||||| ||||||||||||||||| |||||  | |||||||||    
T  2487929 tttggattggcttatttgagttcatctactgacataagcacttgtgagactgtttgggagaacttatgaaaacaacttat 2488008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 312 - 375
Target Start/End: Complemental strand, 6950468 - 6950405
Alignment:
Q  312 ggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||| ||||||| || ||||||||| ||| ||||| || ||||| |||||||||||||||||    
T  6950468 ggattgacttatttgagtttatctactggcataaacatttgtgagattgtttgggagagcttat 6950405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 304 - 375
Target Start/End: Original strand, 43045641 - 43045711
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||| |||||||||||||||||||||||||||||| || | || | || ||||||||||| ||||| |||||    
T  43045641 gcctgtttggattggcttatttaagcttatctactagc-ataagatttgtgagactgttttggagatcttat 43045711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 8629261 - 8629199
Alignment:
Q  310 ttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagct 372  Q
    ||||||| ||||||||||||||| ||||| ||| || ||||| |||||||| ||| |||||||    
T  8629261 ttggatttgcttatttaagcttacctactggcataagcacttgtgagactgcttgagagagct 8629199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 10062062 - 10062128
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||||||| ||||||||||||  ||  |||||||  || ||| |||||||||||||||    
T  10062062 tttggattggcttatttgagcttatctactaacatcaacacttacgaaactatttgggagagcttat 10062128  T

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Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 398 - 443
Target Start/End: Complemental strand, 11188295 - 11188249
Alignment:
Q  398 tataagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||    
T  11188295 tataagtgcttatgtataagttgtttctataacaaaagataaaataa 11188249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 388
Target Start/End: Original strand, 30191071 - 30191141
Alignment:
Q  318 gcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||| || ||||||| | ||| || ||||| | ||||||||||||||||||||| || |||||||||    
T  30191071 gcttatttgagtttatctattggcataagcacttgttagactgtttgggagagcttatggaaacaacttat 30191141  T

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Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 312 - 369
Target Start/End: Complemental strand, 34849250 - 34849193
Alignment:
Q  312 ggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||| |||||||| |||||| ||||| ||| ||  ||||||||||||||||||||||    
T  34849250 ggattagcttatttgagcttagctactggcataagtacttttgagactgtttgggaga 34849193  T

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Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 43717849 - 43717882
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatcta 336  Q
    ||||||||||||||||||||||| ||||||||||    
T  43717849 ggcctatttggattggcttatttgagcttatcta 43717882  T

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Target: chr8; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 444
Target Start/End: Original strand, 1112786 - 1112830
Alignment:
Q  401 aagtgcttatgtata-gctgtttctataacaaaagatacaataag 444  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  1112786 aagtgcttatgtatatgctatttctataacaaaagataaaataag 1112830  T

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Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 315 - 375
Target Start/End: Complemental strand, 3953945 - 3953885
Alignment:
Q  315 ttggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||| ||| |||||||| ||| || ||||| ||| ||||||||||||| |||||    
T  3953945 ttggcttatttgagcctatctactggcataagcacttgtgaaactgtttgggagaacttat 3953885  T

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Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 14926903 - 14926967
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctt 373  Q
    ||||||||| ||||||| | ||||| |||| ||| || ||||| |||||||||||| ||||||||    
T  14926903 tttggattgacttatttgaacttatttactggcataagcacttgtgagactgtttgagagagctt 14926967  T

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Target: chr1 (Bit Score: 48; Significance: 3e-18; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 4549462 - 4549541
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||| || ||||||||| ||| || || || |||||||||||||||||||||||||| |||||||||    
T  4549462 tttggattggcttatttgagattatctactggcataagcatttctgagactgtttgggagagcttatagaaacaacttat 4549541  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 306 - 388
Target Start/End: Complemental strand, 5157224 - 5157142
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||||||| ||||||| | |||||||||   || |||||||| ||| |||||||||||||||||||||| |||||||||    
T  5157224 ctatttggattgacttatttgaacttatctacggacataaacacttgtgaaactgtttgggagagcttatagaaacaacttat 5157142  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 7217995 - 7218059
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctt 373  Q
    ||||||||| |||||||||||||||||||  ||| |||||||| ||||| |||||||| ||||||    
T  7217995 tttggattgacttatttaagcttatctaccggcataaacacttctgagattgtttgggggagctt 7218059  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 21002304 - 21002248
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgg 365  Q
    ||||||||||||||||| |||||||||||||||| ||  |||| |||||||||||||    
T  21002304 tttggattggcttatttgagcttatctacttgcataagaacttgtgagactgtttgg 21002248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 6659829 - 6659763
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||| |||||||||||| ||| || ||||| ||||||| ||||||| |||||||    
T  6659829 tttggattgacttattttagcttatctactagcataagcacttgtgagactatttgggatagcttat 6659763  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 28467230 - 28467296
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||| ||| |||||||||| |  || |||||||| ||| |||||||||||||||||||    
T  28467230 tttggattggcttgtttgagcttatctattgacacaaacacttgtgaaactgtttgggagagcttat 28467296  T

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Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 388
Target Start/End: Original strand, 4118810 - 4118871
Alignment:
Q  327 agcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||||||| | | |||||||||||||||| ||||  |||||||||||| |||||||||    
T  4118810 agcttatctactagtataaacacttttgagactctttgaaagagcttatagaaacaacttat 4118871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 18327065 - 18327146
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||||| ||||||||||||  || || ||||||||| ||| ||||| ||| |||||  | |||||||||    
T  18327065 tatttggattggcttatttgagcttatctactgtcataagcacttttgacactatttggaagaacttatgaaaacaacttat 18327146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 326 - 375
Target Start/End: Complemental strand, 44422831 - 44422782
Alignment:
Q  326 aagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||| | | |||||||||||||||||| |||||||||||||    
T  44422831 aagcttatctactgggataaacacttttgagactgtctgggagagcttat 44422782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 46852198 - 46852137
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgg 365  Q
    |||||||||||||| ||||||||| |||||||| | ||| |||||||  |||||||||||||    
T  46852198 gcctatttggattgacttatttaaacttatctagtggcataaacactcctgagactgtttgg 46852137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 6292641 - 6292581
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||||||| ||||||| ||||||||||||  || || ||||||||||| |||||||||||    
T  6292641 tttggattgacttatttgagcttatctactgacataagcacttttgagattgtttgggaga 6292581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 9507382 - 9507314
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||| ||| |||||||| |||||||||||| ||| |  || || |||||||||||||||||||||||    
T  9507382 tatttgaatttgcttatttgagcttatctactagcataggcatttgtgagactgtttgggagagcttat 9507314  T

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Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 32515356 - 32515428
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||| |||||||| || ||||| || |||||||||  || || ||||| |||||||||||||||||||||||    
T  32515356 ggcctgtttggattagcatatttgagtttatctactaacataagcacttgtgagactgtttgggagagcttat 32515428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 38081642 - 38081718
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 95  Q
    |||||||  ||| |||||||||||| ||||||||||  ||||||||||| ||||||| |  |||||||||| |||||    
T  38081642 aagataacttttgaaacttttaagacattgaatgcacaatttccaagaaaaaacttcaacatttagtttcttaactt 38081718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Original strand, 31517668 - 31517727
Alignment:
Q  316 tggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||||| ||||||| |||| ||| || ||||| ||||||||||||||||| |||||    
T  31517668 tggcttatttgagcttatttactggcataagcacttgtgagactgtttgggagaacttat 31517727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 3319867 - 3319933
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||| |||||||||||| |||||| || || |||||||| |||  |||||||||    
T  3319867 tttggattgacttatttgagcttatctactagcaaaagcaattatgagactgattgaaagagcttat 3319933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 22416829 - 22416911
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||||||||||||||| |||||||||||| ||| ||  |||  |||||||| || | ||| |||| | |||||||||||    
T  22416829 ctatttggattggcttatttgagcttatctactggcataagtactcatgagactgattcgaagaacttagaaatacaacttat 22416911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 26866462 - 26866396
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||| ||||||||||||  || ||| |||| ||||||| ||||| |||||||||    
T  26866462 tttggattgacttatttcagcttatctactaacacaaatacttctgagactatttggaagagcttat 26866396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 37209896 - 37209838
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttcta 77  Q
    |||||||  ||| |||||||||||||||| ||||||  ||||||||||| |||||||||    
T  37209896 aagataacttttgaaacttttaagatattaaatgcacaatttccaagaaaaaacttcta 37209838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 388
Target Start/End: Original strand, 23373272 - 23373313
Alignment:
Q  347 cacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||| ||||| |||||||||||||||||||| |||||||||    
T  23373272 cacttgtgagattgtttgggagagcttatagaaacaacttat 23373313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Original strand, 38170616 - 38170677
Alignment:
Q  314 attggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||| ||||||||| ||||| |||| |||  ||||||| |||||||| ||||||||||||||    
T  38170616 attgacttatttaaccttatatactggcatgaacacttgtgagactgcttgggagagcttat 38170677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 52190278 - 52190209
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||||||||||| | | ||||||| |||  ||||||| |||| |||||||| | |||||||||||    
T  52190278 tttggattggcttatttgaacatatctacctgcttaaacactgttgaaactgtttgagtgagcttataga 52190209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 301 - 337
Target Start/End: Complemental strand, 1731016 - 1730980
Alignment:
Q  301 aaggcctatttggattggcttatttaagcttatctac 337  Q
    ||||| ||||||||||||||||| |||||||||||||    
T  1731016 aaggcttatttggattggcttatataagcttatctac 1730980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 13037794 - 13037834
Alignment:
Q  398 tataagtgcttatgtata-gctgtttctataacaaaagata 437  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  13037794 tataagtgcttatgtataagctatttctataacaaaagata 13037834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 15581404 - 15581324
Alignment:
Q  308 atttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||| | |||||||| ||||||||||||  || || ||||| ||||| ||||||| |||||| || || |||||||||    
T  15581404 atttggaatagcttattttagcttatctactgacataagcacttgtgagattgtttggaagagctaatggaaacaacttat 15581324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 330 - 374
Target Start/End: Complemental strand, 15709977 - 15709933
Alignment:
Q  330 ttatctacttgcaaaaacacttttgagactgtttgggagagctta 374  Q
    ||||||||| ||| || ||||||||||||||||||||||| ||||    
T  15709977 ttatctactagcataagcacttttgagactgtttgggagaactta 15709933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 35017727 - 35017675
Alignment:
Q  313 gattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgg 365  Q
    ||||||||||||| |||||||||| | ||| |||||||| ||||| |||||||    
T  35017727 gattggcttatttgagcttatctattggcataaacacttgtgagattgtttgg 35017675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 309 - 385
Target Start/End: Complemental strand, 31341284 - 31341208
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaact 385  Q
    ||||||||| ||||||| ||||| |||||||||| |||||||||| |||||||||||||||| |||| || ||||||    
T  31341284 tttggattgacttatttgagcttttctacttgcataaacacttttaagactgtttgggagagtttatggaaacaact 31341208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 48025488 - 48025415
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 92  Q
    ||||| |||||| ||| |||||||||| | |||||| |||||||||||| || |||||||||||||||||||||    
T  48025488 aagattaaattttaaatttttaagatagtaaatgcatcatttccaagaaaaagcttctatgtttagtttctaaa 48025415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 1418568 - 1418499
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||| ||||||| |||||||||||| ||| || ||||| |||| ||||||| |||||||||||||    
T  1418568 tttggattgacttatttgagcttatctactggcataagcacttatgaggctgtttgtgagagcttataga 1418499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 305 - 375
Target Start/End: Original strand, 3836600 - 3836670
Alignment:
Q  305 cctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||| ||||||| |||||||||||| ||  || ||||| ||| ||||||||||||| |||||    
T  3836600 cctatttggattgccttatttgagcttatctactggcttaagcacttgtgaaactgtttgggagaacttat 3836670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 310 - 375
Target Start/End: Complemental strand, 529510 - 529445
Alignment:
Q  310 ttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||| ||||||| |||||||||||| ||| |||||||| |||| || ||||||||| |||||    
T  529510 ttggattgacttatttgagcttatctactggcataaacacttgtgaggctatttgggagaacttat 529445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 387
Target Start/End: Complemental strand, 8427169 - 8427084
Alignment:
Q  302 aggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactta 387  Q
    ||||||||||||||||  |||||| ||||||||||||  || ||  |||| |||||||||||||| |||| ||| || ||||||||    
T  8427169 aggcctatttggattgatttatttgagcttatctactaacataagtacttgtgagactgtttgggggagcctatggaaacaactta 8427084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 313 - 378
Target Start/End: Original strand, 10079264 - 10079329
Alignment:
Q  313 gattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||||||| ||||||| |||  ||| |||||||| ||||  ||||||||||||||||||||    
T  10079264 gattggcttatttgagcttatttacgagcataaacacttatgaggttgtttgggagagcttataga 10079329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 388
Target Start/End: Original strand, 12234804 - 12234889
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||| |||| || |||||||||||| |||  | ||| | |||||||| |||| | |||||||||| |||||||||    
T  12234804 ggcctatttggattgacttagttgagcttatctactggcattagcacgtgtgagactgcttggaatagcttatagaaacaacttat 12234889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 19 - 92
Target Start/End: Complemental strand, 18700029 - 18699956
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 92  Q
    |||| ||||||| |||||||||| |||||||||| |  ||||||||||| ||  ||||| ||||||||||||||    
T  18700029 aagacaaaatttcaaacttttaatatattgaatgtacaatttccaagaaaaagtttctaggtttagtttctaaa 18699956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 30751668 - 30751599
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||  ||||||||| ||||||||||  || || ||||| || |||||||||||||||||||||||    
T  30751668 tttggattaacttatttaaacttatctactgacataagcacttgtgcgactgtttgggagagcttataga 30751599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 369
Target Start/End: Complemental strand, 23215004 - 23214944
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||||||| ||||||| | |||||||||| ||| |||||||| |||||||||||| ||||    
T  23215004 tttggattgacttatttgaccttatctactagcataaacacttatgagactgtttgagaga 23214944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 48157085 - 48157120
Alignment:
Q  353 tgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||||||||||||||||||||| |||||||||    
T  48157085 tgagactgtttgggagagcttatagaaacaacttat 48157120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 304 - 365
Target Start/End: Complemental strand, 389992 - 389931
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgg 365  Q
    |||||||||||||||||||||| ||| ||||||||| || ||  |||| |||||||| ||||    
T  389992 gcctatttggattggcttatttgagcctatctacttccataagtacttgtgagactggttgg 389931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 400 - 444
Target Start/End: Original strand, 33894555 - 33894600
Alignment:
Q  400 taagtgcttatgtata-gctgtttctataacaaaagatacaataag 444  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaataag 33894600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 443
Target Start/End: Original strand, 5373157 - 5373201
Alignment:
Q  400 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||    
T  5373157 taagtgcttatgtatatgctatttctataacaaaagataaaataa 5373201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 388
Target Start/End: Complemental strand, 46082190 - 46082106
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||| |||||||||||| |||| | |||| ||||| ||| ||||| |||||||||||||   ||||||||||  | |||||||||    
T  46082190 gcctgtttggattggctaatttgatcttacctactggcataaacaattttgagactgttaatgagagcttatgaaaacaacttat 46082106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 19429391 - 19429457
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||||||| ||||||| |||| | | |||||||| |||||||||||||||||||||||    
T  19429391 tttggattggcttatttgagcttatttactggtataaacacttgtgagactgtttgggagagcttat 19429457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 18628472 - 18628553
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||| ||||| | ||||| ||||||||||||  || |||||||| |||||||||||||||||||||||  | |||||||||    
T  18628472 tatttagattgacgtatttgagcttatctactgacataaacacttgtgagactgtttgggagagcttatgaaaacaacttat 18628553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 11264450 - 11264371
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||| ||  |||||||| ||| |||||  | ||||||||||||||||||| ||||||  ||||||||    
T  11264450 tttggattggcttatttgagtctatctactagcataaacatctgtgagactgtttgggagagcatatagaatcaacttat 11264371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 94
Target Start/End: Original strand, 27382041 - 27382116
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaact 94  Q
    |||| ||||||| |||||||||| |||||||||  |  ||||||||||| ||  ||||||||||||||||||||||    
T  27382041 aagacaaaatttcaaacttttaatatattgaatatacaatttccaagaaaaagtttctatgtttagtttctaaact 27382116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 32 - 95
Target Start/End: Original strand, 30617630 - 30617693
Alignment:
Q  32 aaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 95  Q
    |||||||||||| ||||||||||  ||||||||||| |||||||||| ||| |||||| |||||    
T  30617630 aaacttttaagagattgaatgcacaatttccaagaaaaaacttctatatttggtttcttaactt 30617693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 39178187 - 39178253
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| | ||||||||| ||||||||  || |||||||||||| ||||||||||||| |||||    
T  39178187 tttggattgacgtatttaagcatatctactgacataaacacttttgacactgtttgggagaacttat 39178253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 44320098 - 44320032
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||||| |||||| |||||| ||| | ||| ||||| || |||||||||||||||||||||||    
T  44320098 tttggattggtttatttgagcttacctattggcataaacaattgtgagactgtttgggagagcttat 44320032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 310 - 378
Target Start/End: Complemental strand, 1017176 - 1017108
Alignment:
Q  310 ttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    |||||||| ||||||| |||| |||||||  || |||||||| ||||||||||||| ||| ||||||||    
T  1017176 ttggattgacttatttgagctaatctactgacataaacacttgtgagactgtttggaagaacttataga 1017108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 340 - 388
Target Start/End: Original strand, 19394715 - 19394763
Alignment:
Q  340 gcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||||||||| ||||||||||||  |||||||||||| |||||||||    
T  19394715 gcaaaaacacttgtgagactgtttgccagagcttatagaaacaacttat 19394763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 388
Target Start/End: Complemental strand, 2996730 - 2996643
Alignment:
Q  301 aaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||| |||| |||||||| | ||||| || |  || || |||||||||||||||||| ||||||||||  | |||||||||    
T  2996730 aaggcctatttagattagcttatttgaacttatttattgacataagcacttttgagactgtttgagagagcttatgaaaacaacttat 2996643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 353 - 388
Target Start/End: Original strand, 6987706 - 6987741
Alignment:
Q  353 tgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||||||||| ||||||||||||    
T  6987706 tgagactgtttgggagagcttatggatacaacttat 6987741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 7367975 - 7368038
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagct 372  Q
    ||||||||| ||||||| || ||||||||  ||| |||| ||| ||||||||||||||||||||    
T  7367975 tttggattgacttatttgagtttatctacaggcataaacgcttgtgagactgtttgggagagct 7368038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 307 - 378
Target Start/End: Complemental strand, 25896935 - 25896864
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    ||||||||||  ||||||| || ||||||||| |||  | ||||| ||||||||||| ||||||||||||||    
T  25896935 tatttggattcacttatttgagtttatctactagcattagcacttgtgagactgtttaggagagcttataga 25896864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 9316674 - 9316608
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||| |||| ||| | || || |||||||| ||| |||||||||||||||||||    
T  9316674 tttggattgacttatttgagctcatccatttacataaacacttgtgaaactgtttgggagagcttat 9316608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 369
Target Start/End: Original strand, 22772391 - 22772457
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||| ||||||||| || |||||   ||||||||| ||| |||||||||||||| |||||||||||    
T  22772391 ggcctgtttggattgactcatttagttttatctactagcataaacacttttgagattgtttgggaga 22772457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 42866217 - 42866151
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||| ||| || |||| |||| ||| |||||| ||||||||| ||||||||| |||||    
T  42866217 tttggattggcttgtttgagtttatttactggcataaacacctttgagactctttgggagaacttat 42866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 1075607 - 1075550
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttggg 366  Q
    |||| |||||||||||| |||||||||||| ||| |||||||| ||| || |||||||    
T  1075607 tttgaattggcttatttgagcttatctactggcataaacacttgtgaaacagtttggg 1075550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 437
Target Start/End: Original strand, 4191664 - 4191709
Alignment:
Q  393 tatcttataagtgcttatgtat-agctgtttctataacaaaagata 437  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaaagata 4191709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 336
Target Start/End: Original strand, 19394864 - 19394897
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatcta 336  Q
    ||||||||||||||||||||||| ||||||||||    
T  19394864 ggcctatttggattggcttatttgagcttatcta 19394897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 378
Target Start/End: Original strand, 20935945 - 20936014
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttataga 378  Q
    |||||||||| |||||| |||||||||||| |||||| ||||   ||| ||||||| || ||||||||||    
T  20935945 tttggattggtttatttgagcttatctactggcaaaatcactcacgaggctgtttgagaaagcttataga 20936014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 305 - 338
Target Start/End: Original strand, 22845623 - 22845656
Alignment:
Q  305 cctatttggattggcttatttaagcttatctact 338  Q
    ||||||||||||||||||||| ||||||||||||    
T  22845623 cctatttggattggcttatttgagcttatctact 22845656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 398 - 442
Target Start/End: Complemental strand, 40709520 - 40709475
Alignment:
Q  398 tataagtgcttatgtata-gctgtttctataacaaaagatacaata 442  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  40709520 tataagtgcttatttataagctgtttctataacaaaagataaaata 40709475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 308 - 388
Target Start/End: Complemental strand, 14172121 - 14172041
Alignment:
Q  308 atttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||| |||| ||||||| ||||||||||||| ||  ||||||| ||||  ||||||| ||||||||| || ||| |||||    
T  14172121 atttgaattgacttatttgagcttatctactttcattaacacttctgagtatgtttggaagagcttatggaaacagcttat 14172041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 23320006 - 23319943
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||| ||||||||||||||||| || ||||||||| ||| | |   ||||||||||||||||||||    
T  23320006 ggcctgtttggattggcttatttgagattatctactagcataca---ttttgagactgtttgggaga 23319943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 27123268 - 27123352
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||| ||||||||  ||||||| |||||||  ||| ||| ||  |||| |||||||||||| |||||||||| || |||||||||    
T  27123268 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttat 27123352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 339
Target Start/End: Original strand, 27329991 - 27330027
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctactt 339  Q
    ||||| |||| ||||||||||||||||||||||||||    
T  27329991 ggcctgtttgaattggcttatttaagcttatctactt 27330027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 341 - 385
Target Start/End: Original strand, 41097209 - 41097253
Alignment:
Q  341 caaaaacacttttgagactgtttgggagagcttatagatacaact 385  Q
    ||||| ||||| |||||||||| ||||||||||||||| ||||||    
T  41097209 caaaagcacttgtgagactgttcgggagagcttatagaaacaact 41097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 319 - 363
Target Start/End: Original strand, 46187840 - 46187884
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgttt 363  Q
    ||||||| |||||||||||| ||| |||||||| |||||||||||    
T  46187840 cttatttgagcttatctactggcataaacacttatgagactgttt 46187884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 47970248 - 47970288
Alignment:
Q  398 tataagtgcttatgtata-gctgtttctataacaaaagata 437  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  47970248 tataagtgcttatgtataagctatttctataacaaaagata 47970288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 54877349 - 54877424
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 95  Q
    |||||||||||||| | |||||  | ||||||||||  |||| |||||| | | |||||||||||||||||||||||    
T  54877349 aagataaaatttaagatttttat-acattgaatgcacaattttcaagaaaatatttctatgtttagtttctaaactt 54877424  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 297 - 387
Target Start/End: Original strand, 24158425 - 24158515
Alignment:
Q  297 caccaaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactta 387  Q
    |||| |||| ||||||||||||||||||||||||||||||||  || ||  |||| ||| |||||||| |||||||||| || ||||||||    
T  24158425 cacctaggcatatttggattggcttatttaagcttatctactgacataagtacttgtgaaactgtttgcgagagcttatggaaacaactta 24158515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 303 - 369
Target Start/End: Complemental strand, 41057310 - 41057244
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    |||||||||| |||||||||||| ||||||||||| |||| || ||||| |||||||||||||||||    
T  41057310 ggcctatttgaattggcttatttgagcttatctacatgcataagcacttgtgagactgtttgggaga 41057244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 3775772 - 3775851
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||| ||||||| || ||||||||| ||| ||||| || | ||||||||||| |||||||||||| |||||||||    
T  3775772 tttggattgccttatttgagtttatctactggcataaacaattgttagactgtttggcagagcttatagaaacaacttat 3775851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 44014713 - 44014774
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttg 364  Q
    ||||| ||||||||||||||||| || ||||||||| ||| |||||||| ||||||||||||    
T  44014713 ggcctgtttggattggcttatttgagtttatctactagcataaacacttgtgagactgtttg 44014774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 22667558 - 22667486
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||||||||| ||||||||||||  || || ||||| |||||||||||| ||||| ||||    
T  22667558 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22667486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 22724197 - 22724125
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||||||||||| ||||||||||||  || || ||||| |||||||||||| ||||| ||||    
T  22724197 ggcctatttcgattggcttatttgagcttatctactgacataagcacttgtgagactgtttgagagagtttat 22724125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 50129134 - 50129058
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 95  Q
    |||||||||||| |||||||||| ||||||||||||  |||| ||| || |   |||||||||||||||||||||||    
T  50129134 aagataaaatttcaaacttttaatatattgaatgcacaattttcaaaaaaaggtttctatgtttagtttctaaactt 50129058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 26042273 - 26042343
Alignment:
Q  22 ataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaa 92  Q
    ||||||||| | |||||||||||||||||||||  |||| |||||| ||||||  |||||| |||||||||    
T  26042273 ataaaattttatacttttaagatattgaatgcattattttcaagaaaaaactttcatgttttgtttctaaa 26042343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 50016041 - 50015969
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||| ||||||||||||||| | || ||||||| | ||| |||||||| |||||||||||| |||| |||||    
T  50016041 ggcctctttggattggcttatctcagtttatctattggcataaacacttgtgagactgtttgagagaacttat 50015969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 2100100 - 2100179
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||| ||||||| |||||||||    || ||||||||| |||||||||||| |||||||||| || ||| |||||    
T  2100100 tttggattgacttatttgagcttatctttcagctaaaacacttgtgagactgtttgtgagagcttatggagacagcttat 2100179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 320 - 375
Target Start/End: Original strand, 12985295 - 12985350
Alignment:
Q  320 ttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||| |||||||| ||||||| || |||||| ||||||||||| ||||||||||    
T  12985295 ttatttgagcttatccacttgcataagcactttcgagactgtttgagagagcttat 12985350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 384
Target Start/End: Complemental strand, 32663787 - 32663712
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaac 384  Q
    ||||||||||||||||| |||||||||||   |||| |||||| ||||||| |||| ||||| |||| || |||||    
T  32663787 tttggattggcttatttgagcttatctaccgacaaatacacttgtgagactatttgagagagtttatggaaacaac 32663712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Original strand, 49845461 - 49845540
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||| ||||||| ||||||| |||| | | ||| |||| ||| ||| ||||||||||||||| || |||||||||    
T  49845461 tttggattgacttatttgagcttatatactagtataaaaacttatgaaactatttgggagagcttatggaaacaacttat 49845540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 21574641 - 21574560
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacactt--ttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||| || ||||||| | |||||||||| |||||| || ||  ||||||||||||||||||||||||  | |||||||||    
T  21574641 tttggaatgacttatttgaacttatctactggcaaaatcaattgtttgagactgtttgggagagcttatgaaaacaacttat 21574560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 375
Target Start/End: Complemental strand, 45590780 - 45590734
Alignment:
Q  329 cttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||||| ||| || ||||| |||||||||||||||||||||||    
T  45590780 cttatctactagcataagcacttgtgagactgtttgggagagcttat 45590734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 375
Target Start/End: Original strand, 20194951 - 20195020
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||  |||||| | ||||||| |||||| || || || |||||||||||| ||||||||||    
T  20194951 ctatttggattgatttatttgaacttatcttcttgcataagcagttgtgagactgtttgtgagagcttat 20195020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 342
Target Start/End: Complemental strand, 20880625 - 20880592
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgca 342  Q
    ||||||||||||||||| ||||||||||||||||    
T  20880625 tttggattggcttatttgagcttatctacttgca 20880592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 37273277 - 37273204
Alignment:
Q  315 ttggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||| | ||||| || | ||| || ||||  ||||||||||||||||||||||| || |||||||||    
T  37273277 ttggcttatttgaacttatttattagcataagcactggtgagactgtttgggagagcttatggaaacaacttat 37273204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 364
Target Start/End: Original strand, 53891810 - 53891871
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttg 364  Q
    |||||||| |||||||||||| | |||||||||||| ||| |||||||| |||  |||||||    
T  53891810 ggcctattcggattggcttatatcagcttatctactagcataaacacttgtgaacctgtttg 53891871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 375
Target Start/End: Original strand, 24603667 - 24603739
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| ||||| ||||||| || || |||||| ||| || ||| | ||||||||||||||||| |||||    
T  24603667 ggcctatttagattgccttatttgaggttttctactagcataagcacctctgagactgtttgggagaacttat 24603739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 301 - 375
Target Start/End: Original strand, 40335786 - 40335860
Alignment:
Q  301 aaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||| ||||||||| ||||||| || ||||||||| ||| |||||||| ||||||||||||| |||| ||||    
T  40335786 aaggcctgtttggattgacttatttgagtttatctactcgcacaaacacttgtgagactgtttggtagagtttat 40335860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 297 - 376
Target Start/End: Complemental strand, 10391503 - 10391424
Alignment:
Q  297 caccaaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 376  Q
    ||||| ||||| ||| ||||||||||||||||||||||| || ||| || ||||| ||||| ||||||| |||| |||||    
T  10391503 caccagggcctgtttcgattggcttatttaagcttatctgctggcataatcacttgtgagattgtttggaagagtttata 10391424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 319 - 369
Target Start/End: Complemental strand, 444061 - 444011
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgtttgggaga 369  Q
    ||||||| |||||||||| ||||| |||||||| |||||||||||||||||    
T  444061 cttatttgagcttatctaattgcataaacacttgtgagactgtttgggaga 444011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 10771806 - 10771864
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttg 364  Q
    |||||||||||||||||||| |||||||||||| ||| || ||||| ||||| ||||||    
T  10771806 ctatttggattggcttatttgagcttatctactggcataagcacttgtgagattgtttg 10771864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 309 - 387
Target Start/End: Original strand, 11297117 - 11297195
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactta 387  Q
    |||| |||| |||||||||||||||||| | ||| |||||||| | ||||||||||  ||||||||| || ||||||||    
T  11297117 tttgaattgacttatttaagcttatctagtggcataaacacttgtaagactgtttgaaagagcttatggaaacaactta 11297195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 319 - 388
Target Start/End: Complemental strand, 11457237 - 11457168
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||| |||||||||| | ||| |||||||| ||||||||||| | ||||||||| || |||||||||    
T  11457237 cttatttgagcttatctattggcagaaacacttgtgagactgttttgaagagcttatggaaacaacttat 11457168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 14980660 - 14980591
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 376  Q
    |||||||| || ||||||| |||||||||||| ||| || |||| | ||||||||||| |||||||||||    
T  14980660 tatttggaatgacttatttgagcttatctactggcataagcactatagagactgtttgagagagcttata 14980591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 305 - 374
Target Start/End: Complemental strand, 31723958 - 31723889
Alignment:
Q  305 cctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctta 374  Q
    ||||||||||||| ||||||| ||||||| |||| ||| |||||||| ||||||| ||||  ||||||||    
T  31723958 cctatttggattgacttatttgagcttatgtactagcataaacacttatgagactatttgtaagagctta 31723889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 309 - 385
Target Start/End: Original strand, 39257315 - 39257391
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaact 385  Q
    |||||| |||||||||||||||||||||||  || || ||||| ||||||||| || || |||||| ||| ||||||    
T  39257315 tttggactggcttatttaagcttatctactaacataagcacttgtgagactgtgtgcgaaagcttagagaaacaact 39257391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 313 - 388
Target Start/End: Original strand, 34117473 - 34117547
Alignment:
Q  313 gattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||  |||||||||||| ||| |||||||| | ||||||| | ||||||||||| || |||||||||    
T  34117473 gattggcttattggagcttatctactggcataaacacttgttagactgtct-ggagagcttatggagacaacttat 34117547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 306 - 388
Target Start/End: Original strand, 11296917 - 11296999
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||| ||||| ||||||||||||||||||   ||||||||| ||  |||||| ||||| |||||||||  | |||||||||    
T  11296917 ctattttgattgacttatttaagcttatctaggggcaaaaacatttacgagactatttggaagagcttatgaaaacaacttat 11296999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 32849327 - 32849261
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||| |||| ||||||||||||||||||||  || || ||||| |||| |||||||||||| |||||    
T  32849327 tttgaattgacttatttaagcttatctactatcataagcacttgtgaggctgtttgggagaacttat 32849261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 37954836 - 37954770
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||||||| |||||||||||  ||| ||| | ||| ||||||||| ||||||| ||||    
T  37954836 tttggattggcttatttgagcttatctacaggcataaaaaatttagagactgttcgggagagtttat 37954770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 306 - 351
Target Start/End: Original strand, 11615572 - 11615617
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacactt 351  Q
    |||||||||||||||||||| ||||||||||||  || ||||||||    
T  11615572 ctatttggattggcttatttgagcttatctactaacataaacactt 11615617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 40048419 - 40048374
Alignment:
Q  399 ataagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||    
T  40048419 ataagtgcttatgtataagttgtttctataacaaaagataaaataa 40048374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 337
Target Start/End: Complemental strand, 7674800 - 7674768
Alignment:
Q  305 cctatttggattggcttatttaagcttatctac 337  Q
    ||||||||||||||||||||| |||||||||||    
T  7674800 cctatttggattggcttatttgagcttatctac 7674768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 370
Target Start/End: Complemental strand, 19177597 - 19177533
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagag 370  Q
    |||||||||||| ||||||| || ||| ||| | |||  ||||||| ||||||||||||||||||    
T  19177597 ctatttggattgacttatttgagtttacctattggcatgaacacttgtgagactgtttgggagag 19177533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 19521510 - 19521435
Alignment:
Q  19 aagataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaactt 95  Q
    |||| ||||||| |||||||||| | ||||||||||  |||| ||| || || ||| ||||||||||||||||||||    
T  19521510 aagacaaaattttaaacttttaatacattgaatgcacaattttcaaaaagaa-cttatatgtttagtttctaaactt 19521435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 320 - 388
Target Start/End: Complemental strand, 32172791 - 32172723
Alignment:
Q  320 ttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||| ||||||| |||| ||| || ||||| |||||  |||||||||||||||| || |||||||||    
T  32172791 ttatttgagcttatatactagcataagcacttgtgagatagtttgggagagcttatggaaacaacttat 32172723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 36542426 - 36542382
Alignment:
Q  393 tatcttataagtgcttatgtatagctgtttctataacaaaagata 437  Q
    |||| |||||||| |||||||||||| ||||||||||||| ||||    
T  36542426 tatcatataagtgtttatgtatagctatttctataacaaacgata 36542382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 339
Target Start/End: Complemental strand, 41535536 - 41535500
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctactt 339  Q
    ||||| || ||||||||||||||||||||||||||||    
T  41535536 ggcctgttcggattggcttatttaagcttatctactt 41535500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 303 - 388
Target Start/End: Complemental strand, 9996893 - 9996808
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||| ||||| ||| ||||||| |||||||| ||| ||| ||  |||| |||||||| ||||||||||||||||| |||||||||    
T  9996893 ggcctgtttggcttgacttatttgagcttatcaactagcataagtacttgtgagactgcttgggagagcttatagaaacaacttat 9996808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 15120332 - 15120253
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||| ||||||| | |||||||||| ||| ||||| || |||  |||||||||||||||||| || |||||||||    
T  15120332 tttggattgacttatttgaacttatctactagcataaacagttgtgaatctgtttgggagagcttatggaaacaacttat 15120253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 300 - 367
Target Start/End: Original strand, 15370235 - 15370302
Alignment:
Q  300 caaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttggga 367  Q
    |||||||| ||||||||| ||||||| |||||||||||| ||| || || || |||||||||||||||    
T  15370235 caaggcctgtttggattgacttatttgagcttatctactggcataagcatttgtgagactgtttggga 15370302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 301 - 388
Target Start/End: Original strand, 28803443 - 28803530
Alignment:
Q  301 aaggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||| ||||||| |||||||||||  ||| || ||| | |||||||||||| |||| | ||| || |||||||||    
T  28803443 aaggcctatttggattgacttatttgagcttatctaccggcataagcacatgtgagactgtttgagagaacatatggaaacaacttat 28803530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 301 - 338
Target Start/End: Original strand, 37434446 - 37434483
Alignment:
Q  301 aaggcctatttggattggcttatttaagcttatctact 338  Q
    ||||||| ||||||||||||||||||||||||||||||    
T  37434446 aaggcctgtttggattggcttatttaagcttatctact 37434483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 43199701 - 43199765
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgca-aaaacacttttgagactgtttgggaga 369  Q
    |||||||||||||||| ||| |||||||| |||  || ||||||||| |||||||||||||||||    
T  43199701 ctatttggattggcttttttgagcttatccactgtcataaaacacttgtgagactgtttgggaga 43199765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 376
Target Start/End: Complemental strand, 757598 - 757531
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttata 376  Q
    ||||| ||||| ||||| ||||||| |||| ||| ||| |||| |||||||||||||||| |||||||    
T  757598 tttgggttggcatatttgagcttatttactagcataaatacttatgagactgtttgggagggcttata 757531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 388
Target Start/End: Complemental strand, 22878247 - 22878168
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||| ||||||| |||||||| |||  || || ||||| ||||||||||||||||| ||||| || |||| ||||    
T  22878247 tttggattgacttatttgagcttatccactgacataagcacttgtgagactgtttgggagaccttatggaaacaaattat 22878168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 6548038 - 6547972
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||| |||||| ||||||||||||| ||| ||  |||| |||||||||||| | ||||||||    
T  6548038 tttggattgacttattcaagcttatctactagcataagaacttgtgagactgtttgagggagcttat 6547972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 375
Target Start/End: Complemental strand, 11514045 - 11513979
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||||| |||||| || ||||||||| ||| || ||||| |||||||||||  ||||||||||    
T  11514045 tttggattggtttatttgagattatctactagcataagcacttgtgagactgttttagagagcttat 11513979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 347 - 385
Target Start/End: Original strand, 29429716 - 29429754
Alignment:
Q  347 cacttttgagactgtttgggagagcttatagatacaact 385  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  29429716 cacttgtgagactgtttgggagagcttatagaaacaact 29429754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 22 - 96
Target Start/End: Complemental strand, 37980408 - 37980334
Alignment:
Q  22 ataaaatttaaaacttttaagatattgaatgcaacatttccaagaataaacttctatgtttagtttctaaacttg 96  Q
    ||||||||| |||||||||| ||||||||||||  ||||| ||||| |   || ||||||||| |||||||||||    
T  37980408 ataaaatttcaaacttttaatatattgaatgcacaatttctaagaaaaggtttatatgtttagcttctaaacttg 37980334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 374
Target Start/End: Complemental strand, 13867027 - 13866962
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctta 374  Q
    ||||||||| | ||||| ||||||||||||  || |||||||| |||||||||||| |||| ||||    
T  13867027 tttggattgacctatttgagcttatctactgccataaacacttgtgagactgtttgagagaactta 13866962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 443
Target Start/End: Complemental strand, 34055040 - 34054995
Alignment:
Q  399 ataagtgcttatgtatag-ctgtttctataacaaaagatacaataa 443  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  34055040 ataagtgcttatgtataggctatttctataacaaaagataaaataa 34054995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 375
Target Start/End: Complemental strand, 40667563 - 40667490
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctactt-gcaaaaacacttttgagactgtttgggagagcttat 375  Q
    |||||||||| |||| ||||||| | ||||||||||| ||| || ||||| ||||| ||||||| |||||||||    
T  40667563 ggcctatttgtattgtcttatttgaccttatctacttggcataagcacttgtgagattgtttggaagagcttat 40667490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 375
Target Start/End: Original strand, 40837358 - 40837420
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||||||||||||| ||||||||||||  || ||||||    ||||||||||||||||| ||||    
T  40837358 tttggattggcttatttgagcttatctactgacataaacac----gagactgtttgggagagtttat 40837420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 11393793 - 11393749
Alignment:
Q  400 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    
T  11393793 taagtgcttatgtataagctatttctataccaaaagatacaataa 11393749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 400 - 443
Target Start/End: Complemental strand, 11410454 - 11410410
Alignment:
Q  400 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    
T  11410454 taagtgcttatgtataagctatttctataccaaaagatacaataa 11410410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 306 - 386
Target Start/End: Original strand, 41032873 - 41032953
Alignment:
Q  306 ctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactt 386  Q
    |||||||||||| ||||||| |  ||| || |||||| ||||| || ||| |||||||| |||| |||||||| |||||||    
T  41032873 ctatttggattgacttatttgattttacctgcttgcataaacatttgtgatactgtttgagagaacttatagaaacaactt 41032953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 365
Target Start/End: Complemental strand, 41170759 - 41170703
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgg 365  Q
    ||||||||||||||||| || |||||||||  || |||||||| ||||||| |||||    
T  41170759 tttggattggcttatttgagtttatctactaacataaacacttgtgagactatttgg 41170703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 307 - 371
Target Start/End: Original strand, 42852621 - 42852685
Alignment:
Q  307 tatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagc 371  Q
    |||||||||| |||||||| | ||||||| || ||| || ||||| ||||||||||||| |||||    
T  42852621 tatttggatttgcttatttgaacttatctgctggcataagcacttgtgagactgtttggaagagc 42852685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 319 - 375
Target Start/End: Complemental strand, 6949 - 6893
Alignment:
Q  319 cttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttat 375  Q
    ||||||| || ||||||||| ||| |||||||| |||||||||||||||||||||||    
T  6949 cttatttgagtttatctactagcataaacacttgtgagactgtttgggagagcttat 6893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 302 - 387
Target Start/End: Original strand, 9692 - 9777
Alignment:
Q  302 aggcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaactta 387  Q
    |||||||||| |||||  |||||| || |||||||||  || ||| |||| ||||||||||||||||||| ||| || ||||||||    
T  9692 aggcctatttagattgatttatttgagtttatctactaacataaatacttgtgagactgtttgggagagcctatggaaacaactta 9777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 327 - 388
Target Start/End: Complemental strand, 32917328 - 32917267
Alignment:
Q  327 agcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||||| ||||| | | |||||||| ||||||||||||||||||||||| || |||||||||    
T  32917328 agcttacctactagaataaacacttgtgagactgtttgggagagcttatggaaacaacttat 32917267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 354 - 388
Target Start/End: Original strand, 2027764 - 2027798
Alignment:
Q  354 gagactgtttgggagagcttatagatacaacttat 388  Q
    ||||||||||||||||||||||||| |||||||||    
T  2027764 gagactgtttgggagagcttatagaaacaacttat 2027798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 393 - 437
Target Start/End: Complemental strand, 2728001 - 2727956
Alignment:
Q  393 tatcttataagtgcttatgtata-gctgtttctataacaaaagata 437  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||    
T  2728001 tatcatataagtgcttatgtataagctgcttctataacaaaagata 2727956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 304 - 388
Target Start/End: Original strand, 2460067 - 2460151
Alignment:
Q  304 gcctatttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagcttatagatacaacttat 388  Q
    |||| ||||||||  ||||||| |||||||  ||| ||| ||  |||| |||||||||||| |||||||||| || |||||||||    
T  2460067 gcctgtttggattaacttatttgagcttataaactagcataagtacttgtgagactgtttgagagagcttatggaaacaacttat 2460151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 399 - 443
Target Start/End: Original strand, 5551394 - 5551438
Alignment:
Q  399 ataagtgcttatgtatagctgtttctataacaaaagatacaataa 443  Q
    ||||||| |||||||||||| ||| |||||||||||||| |||||    
T  5551394 ataagtgattatgtatagctatttatataacaaaagataaaataa 5551438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 303 - 351
Target Start/End: Complemental strand, 12111122 - 12111074
Alignment:
Q  303 ggcctatttggattggcttatttaagcttatctacttgcaaaaacactt 351  Q
    ||||||||||||||| ||||||| |||||||||||| ||| || |||||    
T  12111122 ggcctatttggattgacttatttgagcttatctactagcataagcactt 12111074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 309 - 373
Target Start/End: Original strand, 24838674 - 24838738
Alignment:
Q  309 tttggattggcttatttaagcttatctacttgcaaaaacacttttgagactgtttgggagagctt 373  Q
    |||||||||  |||||||||||||||   | ||| ||||||||| ||||||||||||| ||||||    
T  24838674 tttggattgagttatttaagcttatccggtggcataaacactttcgagactgtttgggggagctt 24838738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 398 - 437
Target Start/End: Original strand, 31461608 - 31461648
Alignment:
Q  398 tataagtgcttatgtata-gctgtttctataacaaaagata 437  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  31461608 tataagtgcttatgtataagctatttctataacaaaagata 31461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0590 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 443
Target Start/End: Complemental strand, 1219 - 1168
Alignment:
Q  393 tatcttataagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| |||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataa 1168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0275 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 393 - 443
Target Start/End: Original strand, 2756 - 2807
Alignment:
Q  393 tatcttataagtgcttatgtata-gctgtttctataacaaaagatacaataa 443  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| |||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataa 2807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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