View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20724_low_3 (Length: 367)

Name: NF20724_low_3
Description: NF20724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20724_low_3
NF20724_low_3
[»] chr8 (3 HSPs)
chr8 (1-367)||(43393807-43394174)
chr8 (287-332)||(11188249-11188295)
chr8 (290-333)||(1112786-1112830)
[»] scaffold0590 (1 HSPs)
scaffold0590 (282-332)||(1168-1219)
[»] scaffold0275 (1 HSPs)
scaffold0275 (282-332)||(2756-2807)
[»] chr7 (2 HSPs)
chr7 (289-333)||(33894555-33894600)
chr7 (289-332)||(5373157-5373201)
[»] chr6 (3 HSPs)
chr6 (282-326)||(2727956-2728001)
chr6 (288-332)||(5551394-5551438)
chr6 (287-326)||(31461608-31461648)
[»] chr5 (2 HSPs)
chr5 (288-332)||(40048374-40048419)
chr5 (282-326)||(36542382-36542426)
[»] chr4 (3 HSPs)
chr4 (282-326)||(4191664-4191709)
chr4 (287-331)||(40709475-40709520)
chr4 (287-326)||(47970248-47970288)
[»] chr2 (3 HSPs)
chr2 (288-332)||(34054995-34055040)
chr2 (289-332)||(11393749-11393793)
chr2 (289-332)||(11410410-11410454)
[»] chr1 (1 HSPs)
chr1 (287-326)||(13037794-13037834)


Alignment Details
Target: chr8 (Bit Score: 315; Significance: 1e-177; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 43394174 - 43393807
Alignment:
Q  1 tcttcttcttatttatttatgtttgtgtgatgctagtttcttttagtatttatagtttcttctgtgagtttacaaaatgttgaaaacaagaacaaattat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43394174 tcttcttcttatttatttatgtttgtgtgatgctagtttcttttagtgtttatagtttcttctgtgagtttacaaaatgttgaaaacaagaacaaattat 43394075  T
Q  101 gttgaatttgatgtttcttttggtgttgagtaattgagtatgcggataattcagaggaagaggnnnnnnnnnnn-ctccctctctaaaatattttcgaca 199  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||| |||    
T  43394074 gttgaatttgatgtttcttttggcgttgagtaattgagtatgcggataattcagaggaagaggttttttttttttctccctctctaaaatattttctaca 43393975  T
Q  200 ttaatttttgagtttgatatttgaacagaagtcaactaactcacttgttgattggcactggttggataaacaacttatcttatatcttataagtgcttat 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393974 ttaatttttgagtttgatatttgaacagaagtcaactaactcacttgttgattggcactggttggataaacaacttatcttatatcttataagtgcttat 43393875  T
Q  300 gtatagctgtttctataacaaaagatacaataagctcaaaggggtttcttttaagctataagcttttt 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43393874 gtatagctgtttctataacaaaagatacaataagctcaaaggggtttcttttaagctataagcttttt 43393807  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 287 - 332
Target Start/End: Complemental strand, 11188295 - 11188249
Alignment:
Q  287 tataagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||||||||||||||||| | |||||||||||||||||||| |||||    
T  11188295 tataagtgcttatgtataagttgtttctataacaaaagataaaataa 11188249  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 333
Target Start/End: Original strand, 1112786 - 1112830
Alignment:
Q  290 aagtgcttatgtata-gctgtttctataacaaaagatacaataag 333  Q
    ||||||||||||||| ||| |||||||||||||||||| ||||||    
T  1112786 aagtgcttatgtatatgctatttctataacaaaagataaaataag 1112830  T

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Target: scaffold0590 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 332
Target Start/End: Complemental strand, 1219 - 1168
Alignment:
Q  282 tatcttataagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| |||||    
T  1219 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataa 1168  T

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Target: scaffold0275 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 282 - 332
Target Start/End: Original strand, 2756 - 2807
Alignment:
Q  282 tatcttataagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||| |||||||||||||||||| ||| |||||||||||||||||| |||||    
T  2756 tatcatataagtgcttatgtataagctatttctataacaaaagataaaataa 2807  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 333
Target Start/End: Original strand, 33894555 - 33894600
Alignment:
Q  289 taagtgcttatgtata-gctgtttctataacaaaagatacaataag 333  Q
    |||||||||||||||| ||| |||||||||||||||||| ||||||    
T  33894555 taagtgcttatgtataagctatttctataacaaaagataaaataag 33894600  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 332
Target Start/End: Original strand, 5373157 - 5373201
Alignment:
Q  289 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||||||||||||||| ||| |||||||||||||||||| |||||    
T  5373157 taagtgcttatgtatatgctatttctataacaaaagataaaataa 5373201  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 2728001 - 2727956
Alignment:
Q  282 tatcttataagtgcttatgtata-gctgtttctataacaaaagata 326  Q
    |||| |||||||||||||||||| |||| |||||||||||||||||    
T  2728001 tatcatataagtgcttatgtataagctgcttctataacaaaagata 2727956  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 332
Target Start/End: Original strand, 5551394 - 5551438
Alignment:
Q  288 ataagtgcttatgtatagctgtttctataacaaaagatacaataa 332  Q
    ||||||| |||||||||||| ||| |||||||||||||| |||||    
T  5551394 ataagtgattatgtatagctatttatataacaaaagataaaataa 5551438  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 31461608 - 31461648
Alignment:
Q  287 tataagtgcttatgtata-gctgtttctataacaaaagata 326  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  31461608 tataagtgcttatgtataagctatttctataacaaaagata 31461648  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 40048419 - 40048374
Alignment:
Q  288 ataagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    ||||||||||||||||| | |||||||||||||||||||| |||||    
T  40048419 ataagtgcttatgtataagttgtttctataacaaaagataaaataa 40048374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 326
Target Start/End: Complemental strand, 36542426 - 36542382
Alignment:
Q  282 tatcttataagtgcttatgtatagctgtttctataacaaaagata 326  Q
    |||| |||||||| |||||||||||| ||||||||||||| ||||    
T  36542426 tatcatataagtgtttatgtatagctatttctataacaaacgata 36542382  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 282 - 326
Target Start/End: Original strand, 4191664 - 4191709
Alignment:
Q  282 tatcttataagtgcttatgtat-agctgtttctataacaaaagata 326  Q
    |||| ||||||||||||||||| |||| ||||||||||||||||||    
T  4191664 tatcatataagtgcttatgtataagctatttctataacaaaagata 4191709  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 331
Target Start/End: Complemental strand, 40709520 - 40709475
Alignment:
Q  287 tataagtgcttatgtata-gctgtttctataacaaaagatacaata 331  Q
    ||||||||||||| |||| |||||||||||||||||||||| ||||    
T  40709520 tataagtgcttatttataagctgtttctataacaaaagataaaata 40709475  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 47970248 - 47970288
Alignment:
Q  287 tataagtgcttatgtata-gctgtttctataacaaaagata 326  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  47970248 tataagtgcttatgtataagctatttctataacaaaagata 47970288  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 288 - 332
Target Start/End: Complemental strand, 34055040 - 34054995
Alignment:
Q  288 ataagtgcttatgtatag-ctgtttctataacaaaagatacaataa 332  Q
    |||||||||||||||||| || |||||||||||||||||| |||||    
T  34055040 ataagtgcttatgtataggctatttctataacaaaagataaaataa 34054995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 11393793 - 11393749
Alignment:
Q  289 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    
T  11393793 taagtgcttatgtataagctatttctataccaaaagatacaataa 11393749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 289 - 332
Target Start/End: Complemental strand, 11410454 - 11410410
Alignment:
Q  289 taagtgcttatgtata-gctgtttctataacaaaagatacaataa 332  Q
    |||||||||||||||| ||| |||||||| |||||||||||||||    
T  11410454 taagtgcttatgtataagctatttctataccaaaagatacaataa 11410410  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 287 - 326
Target Start/End: Original strand, 13037794 - 13037834
Alignment:
Q  287 tataagtgcttatgtata-gctgtttctataacaaaagata 326  Q
    |||||||||||||||||| ||| ||||||||||||||||||    
T  13037794 tataagtgcttatgtataagctatttctataacaaaagata 13037834  T

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