View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20724_low_4 (Length: 361)
Name: NF20724_low_4
Description: NF20724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20724_low_4 |
 | |
|
| [»] chr7 (14 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 305; Significance: 1e-171; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 9 - 361
Target Start/End: Complemental strand, 20231698 - 20231346
Alignment:
| Q |
9 |
ataatacttgacatttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctc |
108 |
Q |
| |
|
|||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
20231698 |
ataacacttgacatttattagtactaatatattggataagaaaggcaatcttactaagttccgacaatccttctggtattggcctgatcttcacctcctc |
20231599 |
T |
|
| Q |
109 |
caaagattctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcct |
208 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
20231598 |
caaagattctagccataccaaagtctgatatttttggattcaacttctcatctaacaggacattacttgccttcaaacctctatgaataattcttagcct |
20231499 |
T |
|
| Q |
209 |
agaatctctgtgaagatatagcaaccctcgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatctagaata |
308 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20231498 |
agaatctctgtgaagatataacaaccctcgagcaattccttctataatgctataccgtgtcctccgatctaggagtttgttttttgatggatctagaata |
20231399 |
T |
|
| Q |
309 |
taagggtagcattatattatttagaacatattataaacatataaagtgaagtc |
361 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
20231398 |
taagggtagcattatattatttagaacttattataaacatataaagtgaagtc |
20231346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 20243766 - 20243438
Alignment:
| Q |
9 |
ataatacttgacatttattactactaatatattggataagaaaggcaatctt---actaagttccgacaatccttctagtattggcctgatcttcacccc |
105 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
20243766 |
ataatacttgacaattattactactaatatattggataagaaaggcaatcttcttactaagttccgacaatccttctagtattggcctgatcttcacctc |
20243667 |
T |
|
| Q |
106 |
ctccaaagattctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttag |
205 |
Q |
| |
|
||||||| |||||||||| ||||||||| || ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20243666 |
ctccaaatattctagccagaccaaagtctgatatttttggattcaactcctcatctaacaggacattacttgccttcaaatctctatgaataattcttag |
20243567 |
T |
|
| Q |
206 |
cctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatctaga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
20243566 |
cctagaatctctgtgaagatatagcaaccctcgagcaattccttctatgatgttacaccgtgtcctccaatccaggagtttgttttttgatggatctaaa |
20243467 |
T |
|
| Q |
306 |
atataagggtagcattatattatttagaa |
334 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
20243466 |
aaataagggtagcattatattatttagaa |
20243438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 334
Target Start/End: Complemental strand, 20264156 - 20263832
Alignment:
| Q |
9 |
ataatacttgacatttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctc |
108 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
20264156 |
ataatactttacaattattactactaatatattagatat-aaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcacctcctc |
20264058 |
T |
|
| Q |
109 |
caaagattctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcct |
208 |
Q |
| |
|
||||||||||||||||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20264057 |
caaagattctagccataccaaagtctgatatttttggattcaactcctcatctaacagaacattacttgccttcaaatctctatgaataattcttagcct |
20263958 |
T |
|
| Q |
209 |
agaatctctgtgaagatatagcaaccctcgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatctagaata |
308 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||| ||||||||||||||||||||||||| || | |
|
|
| T |
20263957 |
agaatctctgtgaagatatagcaaccctcgagcaattccttctataatgttatgccgtgtcctccaatccaggagtttgttttttgatggatctaaaaaa |
20263858 |
T |
|
| Q |
309 |
taagggtagcattatattatttagaa |
334 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
20263857 |
taagggtagcattatattatttagaa |
20263832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 23 - 325
Target Start/End: Complemental strand, 20285082 - 20284779
Alignment:
| Q |
23 |
ttattactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagcc |
122 |
Q |
| |
|
||||||||||||| ||||||||||||||| | | |||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || |
|
|
| T |
20285082 |
ttattactactaaaatattggataagaaaaggatacttactaagttccgactatccttctagtattggcctgatcttctccccctccaaagattctaacc |
20284983 |
T |
|
| Q |
123 |
ataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaa |
222 |
Q |
| |
|
||||||||||| || ||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20284982 |
ataccaaagtctgatatttttggattcagctcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctagaatctctgtgaa |
20284883 |
T |
|
| Q |
223 |
gatatagcaaccctcgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatctagaat-ataagggtagcatt |
321 |
Q |
| |
|
|||||||||| |||||||| |||||||| || |||||||| ||| | |||||||| ||||| || |||||| ||||||||| ||| ||||||||| || | |
|
|
| T |
20284882 |
gatatagcaatcctcgagctattccttcgattatgctatatcgtatcctccaatccaggagcttatttttttatggatctacaataataagggtatcact |
20284783 |
T |
|
| Q |
322 |
atat |
325 |
Q |
| |
|
|||| |
|
|
| T |
20284782 |
atat |
20284779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 58 - 339
Target Start/End: Complemental strand, 20273913 - 20273632
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
||||||||||||| ||||| || |||||| ||||||| || |||||||||||||||||||||||||||||||||| |||||||||||||| | ||| |
|
|
| T |
20273913 |
cttactaagttccaacaattctggaggtattgacctgatcgtctccccctccaaagattctagccataccaaagtcggcaatttttggattcagctcctc |
20273814 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
20273813 |
gtctaacaagacattacttgccttcaaatctctatgaataattcttagcctggaatctctgtgaagatataacaaccctcgagctattccttctataatg |
20273714 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctaggagtttgttttttgatggatctagaatataagggtagcattatattatttagaacatat |
339 |
Q |
| |
|
|| ||||||| ||||||||||||||||| |||||||||||||||| || ||||||||||||||||||||||| ||| |||| |
|
|
| T |
20273713 |
ttacaccgtgtactccaatctaggagtttattttttgatggatctaaaaaataagggtagcattatattattttgaatatat |
20273632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 37 - 303
Target Start/End: Original strand, 20168021 - 20168287
Alignment:
| Q |
37 |
atattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcgga |
136 |
Q |
| |
|
|||||||||||| ||||| ||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || || |
|
|
| T |
20168021 |
atattggataaggaaggcgcacttactaagttccaacaatcctgctagtattggcctgatcttcacctcctccaaagattctagccataccaaattctga |
20168120 |
T |
|
| Q |
137 |
aatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccct |
236 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || |
|
|
| T |
20168121 |
tatttttggattcaactcctcatctaacaagacattacttgccttcaaatctctatgaataattcttagtctggaatctctgtggagatatagcaatcca |
20168220 |
T |
|
| Q |
237 |
cgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatcta |
303 |
Q |
| |
|
||||| ||||||||||| ||| | |||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
20168221 |
cgagctattccttctattatgttgtaccgtgtcctccaatctaggagtttattttttgatggatcta |
20168287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 58 - 312
Target Start/End: Complemental strand, 20303796 - 20303542
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
|
|
| T |
20303796 |
cttactaagttccgacaaccctggtagtattggcctgattttctctccctccaaagattctagccataccaaagtcggaaatttttggattcagctcctc |
20303697 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
|||||||| || |||||||| |||||||||||| || ||||||||||| || ||||||||||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
20303696 |
atctaacaagatattacttgtcttcaaatctctgtgtataattcttagtctcgaatctctgtgaagatacaacaatcctcgagcaattccttctataatg |
20303597 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctaggagtttgttttttgatggatctagaatataag |
312 |
Q |
| |
|
|||||| ||| ||||||||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
20303596 |
ttataccttgtcctccaatctaggagtttactttttgatggatctaaaatataag |
20303542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 58 - 327
Target Start/End: Complemental strand, 20279617 - 20279348
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
||||||| ||||||||||| || ||||||| |||||| || |||||||||||||||||||||||||||||||| || ||||||||||||| | ||| |
|
|
| T |
20279617 |
cttactatgttccgacaattctggaagtattgacctgattgtctccccctccaaagattctagccataccaaagtctgatatttttggattcagctcctc |
20279518 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||| | ||| |
|
|
| T |
20279517 |
atctaacaggacattacttgccttcaaatctctgtgaataattcttagtctggaatctctgtgaagatatagcaatccgcgagctattccttctgttatg |
20279418 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctaggagtttgttttttgatggatctagaatataagggtagcattatatta |
327 |
Q |
| |
|
| |||||||| ||||||||||||||||| |||||||||||||||| || ||||||||| |||||||||| |
|
|
| T |
20279417 |
ttgtaccgtgtcctccaatctaggagtttattttttgatggatctaaaaaataagggtatcattatatta |
20279348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 26 - 303
Target Start/End: Complemental strand, 20294796 - 20294519
Alignment:
| Q |
26 |
ttactactaatatattggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccata |
125 |
Q |
| |
|
||||| |||| || ||||||||| || ||| ||||||| ||||| |||||||| |||||||||||||||| ||| | |||||||||||||||||||| |
|
|
| T |
20294796 |
ttactgctaaaatgttggataaggtagacaaacttactacgttccaacaatcctgctagtattggcctgatgttctctgcctccaaagattctagccatt |
20294697 |
T |
|
| Q |
126 |
ccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagat |
225 |
Q |
| |
|
|||||||| || ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
20294696 |
ccaaagtccgatatttttggattcagctcctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctcggtgaagat |
20294597 |
T |
|
| Q |
226 |
atagcaaccctcgagcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatcta |
303 |
Q |
| |
|
| ||||| |||||||| ||||||||||| ||||| | ||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
20294596 |
acagcaatcctcgagctattccttctattatgctgtgtcgtgttctccaatctaggagtttattctttgagggatcta |
20294519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 58 - 303
Target Start/End: Original strand, 20062523 - 20062768
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||||||||| | || ||||||||||||||||| |||||||| |||| ||| ||||| ||| ||| |
|
|
| T |
20062523 |
cttactaagttccgacaaccctagtagtattggcctgatcttctcttccaccaaagattctagccattccaaagtcagaaactttgggattaaactcctc |
20062622 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||||||||| |||||||||||||||||||| || |||||||| || | ||||||||||||||||| | || |||||||| ||||||||||||||| |
|
|
| T |
20062623 |
atctaacaggatgttacttgccttcaaatctctgtgtataattctgagtcgggaatctctgtgaagatacaataatcctcgagctattccttctataatg |
20062722 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctaggagtttgttttttgatggatcta |
303 |
Q |
| |
|
||||||| |||||||||||||| ||||| ||||| ||| |||||| |
|
|
| T |
20062723 |
ctatacctagttctccaatctagtagtttatttttcgatagatcta |
20062768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 39 - 302
Target Start/End: Complemental strand, 20289377 - 20289114
Alignment:
| Q |
39 |
attggataagaaaggcaatcttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaa |
138 |
Q |
| |
|
|||||| ||| |||||| |||||||||||||||||| |||| ||||||| | |||||| | |||| | ||||||||||||||||||||||| || | |
|
|
| T |
20289377 |
attggacaaggaaggcacacttactaagttccgacaacccttatagtattttctgtatcttctctcccttcgaagattctagccataccaaagtctgata |
20289278 |
T |
|
| Q |
139 |
tttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcg |
238 |
Q |
| |
|
|||| ||||||||| ||| ||||||| || ||||||| ||| |||||||| || |||||||| | | |||||||| |||||||| ||||| ||||| |
|
|
| T |
20289277 |
ttttgggattcaactcctcgtctaacaagatgttacttgtctttaaatctctgtgtataattctcaatttggaatctctatgaagataaagcaatcctcg |
20289178 |
T |
|
| Q |
239 |
agcaattccttctataatgctataccgtgttctccaatctaggagtttgttttttgatggatct |
302 |
Q |
| |
|
||| ||||| ||||||||| ||||||| || ||||| ||||||||||| ||||||||||||||| |
|
|
| T |
20289177 |
agctattccatctataatgttataccgggtcctccactctaggagtttattttttgatggatct |
20289114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 58 - 303
Target Start/End: Original strand, 20005335 - 20005580
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
||||||| |||||||||| |||| ||||||||| |||||||||| | ||||||||||||| |||||||||||||| || ||||||||||||| |||| |
|
|
| T |
20005335 |
cttactatgttccgacaaccctttgagtattggcatgatcttcactcactccaaagattctggccataccaaagtcagatatttttggattcaggttctc |
20005434 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
|||| || || ||||||||| |||| ||||||||| || ||| ||||||| |||||||| || ||||| ||||| || ||||| ||||||||||| || |
|
|
| T |
20005435 |
gtctagcaagatattacttgctttcatatctctatgtatgatttttagcctggaatctctatgcagataaagcaatccacgagctattccttctattata |
20005534 |
T |
|
| Q |
258 |
ctataccgtgttct-ccaatctaggagtttgttttttgatggatcta |
303 |
Q |
| |
|
||| ||||| |||| |||||| || ||||| ||| |||||||||||| |
|
|
| T |
20005535 |
ctaaaccgt-ttctcccaatccagaagtttatttcttgatggatcta |
20005580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 19939213 - 19938989
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
|||||||||| || |||| ||||| ||||| | |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||| | | | |
|
|
| T |
19939213 |
cttactaagtaccaacaactcttcttgtattttcttgatcttcactccctccaaagattctggccataccaaagtctgatatttttggattaagctcatt |
19939114 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||| || || |||||||| ||||||||||||||| |||||| |||| || ||||||||||| ||||| | ||| |||||||| ||||||||||| ||| |
|
|
| T |
19939113 |
atctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcagatacaacaatcctcgagctattccttctattatg |
19939014 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctagga |
282 |
Q |
| |
|
||| | ||| | |||||||| |||| |
|
|
| T |
19939013 |
ctaaagcgtttcctccaatcaagga |
19938989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 58 - 282
Target Start/End: Complemental strand, 19970352 - 19970128
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
|||||||||| || |||| ||||| ||||| | |||||||||| ||||||||||||||| |||||||||||||| || ||||||||||| | | | |
|
|
| T |
19970352 |
cttactaagtaccaacaactcttcttgtattttcttgatcttcactccctccaaagattctggccataccaaagtctgatatttttggattaagctcatt |
19970253 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||| || || |||||||| ||||||||||||||| |||||| |||| || ||||||||||| ||||| | ||| |||||||| ||||||||||| ||| |
|
|
| T |
19970252 |
atctagcaagatattacttggcttcaaatctctatgtataatttttagtctggaatctctgtgcagatacaacaatcctcgagctattccttctattatg |
19970153 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctagga |
282 |
Q |
| |
|
||| | ||| | |||||||| |||| |
|
|
| T |
19970152 |
ctaaagcgtttcctccaatcaagga |
19970128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 58 - 302
Target Start/End: Original strand, 40823793 - 40824037
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatctc |
157 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| || |||||| | |||||||||||||||||||||||||||||| || ||||||||||||||| ||| |
|
|
| T |
40823793 |
cttactaagttccgacaaccctaatagtattggtcttatcttctctccctccaaagattctagccataccaaagtctgatatttttggattcaactcctc |
40823892 |
T |
|
| Q |
158 |
atctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttctataatg |
257 |
Q |
| |
|
||||||| || ||||||| ||| | |||||| || |||||||| | | ||| |||| |||||||| ||||| |||||||| ||||||||||| ||| |
|
|
| T |
40823893 |
gtctaacaagatgttacttgtctttagatctctgtgtataattctcaatttggaagctctatgaagataaagcaatcctcgagctattccttctatgatg |
40823992 |
T |
|
| Q |
258 |
ctataccgtgttctccaatctaggagtttgttttttgatggatct |
302 |
Q |
| |
|
||||||| || ||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
40823993 |
ttataccgggtcctccagtctaggagtttatttcttgatggatct |
40824037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 120 - 204
Target Start/End: Complemental strand, 31697210 - 31697126
Alignment:
| Q |
120 |
gccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattctta |
204 |
Q |
| |
|
||||| ||||| || || ||||||||||||||| | ||||| |||| || |||||||| || | |||||||||||||||||||| |
|
|
| T |
31697210 |
gccattccaaaatctgatatttttggattcaacttgtcatccaacaatacgttacttgctttgagatctctatgaataattctta |
31697126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 204
Target Start/End: Complemental strand, 31708305 - 31708217
Alignment:
| Q |
116 |
tctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattctta |
204 |
Q |
| |
|
||||||||| ||||| || || |||||||| |||||| | | ||| |||| ||||||||||| || | ||||||||||||||| |||| |
|
|
| T |
31708305 |
tctagccattccaaaatctgatatttttgggttcaacttgtgatccaacaaaacattacttgctttgagatctctatgaataatcctta |
31708217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 114 - 253
Target Start/End: Original strand, 19149170 - 19149309
Alignment:
| Q |
114 |
attctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaat |
213 |
Q |
| |
|
||||| |||| |||||| || ||||||||||| |||| | ||||||| || | |||||| |||||||||||||| ||||||||||| || || || | |
|
|
| T |
19149170 |
attcttgccacaccaaaatcagaaatttttgggttcatattatcatctaggagaatattactagccttcaaatctctgtgaataattctgagtcttgagt |
19149269 |
T |
|
| Q |
214 |
ctctgtgaagatatagcaaccctcgagcaattccttctat |
253 |
Q |
| |
|
| ||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
19149270 |
atttgtgaagatatagtaatccttgagcaattccttctat |
19149309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 108 - 226
Target Start/End: Original strand, 2662470 - 2662588
Alignment:
| Q |
108 |
ccaaagattctagccataccaaagtcggaaatttttggattcaacatctcatctaacaggacattacttgccttcaaatctctatgaataattcttagcc |
207 |
Q |
| |
|
||||| ||||| ||||| |||||||| |||||||||||||||| ||||||| || ||||| ||||| || | |||||||||||| |||||||| | |
|
|
| T |
2662470 |
ccaaacattcttgccattccaaagtcagaaatttttggattcatttcgccatctaaaagaacattgcttgcttttagatctctatgaattattcttagtc |
2662569 |
T |
|
| Q |
208 |
tagaatctctgtgaagata |
226 |
Q |
| |
|
| |||||||| |||||||| |
|
|
| T |
2662570 |
ttgaatctctatgaagata |
2662588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 58 - 250
Target Start/End: Original strand, 2707268 - 2707460
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattcaacatct- |
156 |
Q |
| |
|
||||||| ||||| |||||||| || ||||| ||| || ||| | ||||| |||||||||||||| ||||| || || |||||||||||||| ||| |
|
|
| T |
2707268 |
cttactatgttcccacaatcctccttgtatttccctcattttcgctacctccgaagattctagccatgccaaaatcagatatttttggattcaa-ttctc |
2707366 |
T |
|
| Q |
157 |
catctaacaggacattacttgccttcaaatctctatgaataattcttagcctagaatctctgtgaagatatagcaaccctcgagcaattccttc |
250 |
Q |
| |
|
|||| |||| || |||||||| ||| | |||||||| || ||||||| || |||||||| |||||||| |||| ||||||| |||||||| |
|
|
| T |
2707367 |
catccaacaagatattacttggctttaggtctctatgtattattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttc |
2707460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 2717038 - 2717130
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca |
150 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| ||| | ||| | ||||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2717038 |
cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagtcggatatttttggattca |
2717130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 2723660 - 2723752
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca |
150 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| ||| | ||| | ||||| |||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
2723660 |
cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagtcggatatttttggattca |
2723752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 2745490 - 2745582
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca |
150 |
Q |
| |
|
||||||| ||||| ||||||||||| ||||| ||| | ||| | ||||| |||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
2745490 |
cttactatgttcccacaatccttcttgtatttccctcgttttcgctacctccgaagattctagccatgccaaagttggatatttttggattca |
2745582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 150
Target Start/End: Original strand, 2712514 - 2712606
Alignment:
| Q |
58 |
cttactaagttccgacaatccttctagtattggcctgatcttcaccccctccaaagattctagccataccaaagtcggaaatttttggattca |
150 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||| ||| | |||| |||||||| ||| | ||||| |||||||| || ||||||||||||| |
|
|
| T |
2712514 |
cttactatgttccgaaaatccttcttgtattgccctcgttttcattgcctccaaaaattttggccatgccaaagtcagatatttttggattca |
2712606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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