View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20725_low_1 (Length: 643)
Name: NF20725_low_1
Description: NF20725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20725_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 537; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 18 - 629
Target Start/End: Complemental strand, 39286633 - 39286019
Alignment:
| Q |
18 |
cgtatactattttacgctacaagcctgctagg----tacagttttgcggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagt |
113 |
Q |
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| T |
39286633 |
cgtatactactttacgctacaagcccgctaggaaattacagttttgtggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagt |
39286534 |
T |
|
| Q |
114 |
tatttttctgatcggttactttggatttgtaaaaaaggaatcatttatgcccaaaagaacaagtgcaattagagtattactaacactgtcattgcctttg |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286533 |
tatttttctgatcggttactttggatttgtaaaaaaggaatcatttatgcccaaaagaacaagtgcaattagagtattactaacactgtcattgcctttg |
39286434 |
T |
|
| Q |
214 |
agataaactttcttttaaggccatattgggacatgaataatactaacaactgctgtcatatgataagctaattggcatgatttttatgagtgcttgtagt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286433 |
agataaactttcttttaaggccatattgggacatgaataatactaacaactgctgtcatatgataagctaattggcatgatttttatgagtgcttgtagt |
39286334 |
T |
|
| Q |
314 |
attagtcatggaatatgacatgctattagtatttgctataatttgtaatggtgtaccannnnnnncatattgaagaacaaaggttcagggtgttggcaaa |
413 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| || | | ||||||||||||||| |
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| T |
39286333 |
attagtcatggaatatgacatgctattggtatttgctataatttgtaatggtgtacca-ttttttcatattgaagagcagtgatgcagggtgttggcaaa |
39286235 |
T |
|
| Q |
414 |
aatctatataaatccacaatataactagcaagttgaaatcaattcaaattaaacattgaaatcaaataacagtagtgaaagctggtaggtgcagctttca |
513 |
Q |
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| T |
39286234 |
aatctatataaatccacaatataactagcaagttgaaatcaattcaaattaaacattgaaatcaaataacagtagtgaaagctggtaggtgcagctttca |
39286135 |
T |
|
| Q |
514 |
cgtaaagaaaatagtaatactctatttacaatattaaaccaataagcatatataattcaataggaatatttaacacttgagatactgttggtggtgtttc |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39286134 |
cgtaaagaaaatagtaatactctatttacaatattaaaccaataagcatatataattcaataggaatatttaacacttgagatactgttggtggtgtttc |
39286035 |
T |
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| Q |
614 |
aagcactgctaacaag |
629 |
Q |
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| T |
39286034 |
aagcactgctaacaag |
39286019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 50 - 249
Target Start/End: Original strand, 35516466 - 35516672
Alignment:
| Q |
50 |
tacagttttgcggtatttcaaaaaggggtgaatacctaattgaaaacaattgtatcagcaaagttatttttctgatcggttactttggatttgtaaaaaa |
149 |
Q |
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|||| |||||| ||||||||| ||||||||| |||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||| || |||| |
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| T |
35516466 |
tacaattttgcagtatttcaagaaggggtgagtacctaattgaaaacaattgcatcagagaagttatttttgtgatcttctactttggattagt--aaaa |
35516563 |
T |
|
| Q |
150 |
ggaatcatttatgcccaaaag---aacaagtgcaattagagtattactaacac------tgtcattgcctttgagataaactttcttttaaggccatatt |
240 |
Q |
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||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||||||||| || |||| |
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| T |
35516564 |
ggaatcagttatgcccaaaagcacaacaagtgcaattagagtattactaacacactgtttgttgttgccattgagataaactttcttttaagaccttatt |
35516663 |
T |
|
| Q |
241 |
gggacatga |
249 |
Q |
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||||||||| |
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| T |
35516664 |
gggacatga |
35516672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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