View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20725_low_2 (Length: 481)
Name: NF20725_low_2
Description: NF20725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20725_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 39 - 470
Target Start/End: Original strand, 27597380 - 27597818
Alignment:
| Q |
39 |
actatctatccataatgtatcaaaatttccccatcattcaattatannnnnnnattaaaaaatatattaacttagcgtgacagtaacttattttattatt |
138 |
Q |
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| T |
27597380 |
actatctatccataatgtatcaaaatttccccatcattcaattatatttttttattaaaaaatatattaacttagcgtgacagtaacttattttattatt |
27597479 |
T |
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| Q |
139 |
gtttaaagtatcttat-------tcatgcaatcaaatttgataaaatatctgtgtaaannnnnnngcactacttatatattgtctttatattcttagaat |
231 |
Q |
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| T |
27597480 |
gtttaaagtatcttatctattattcatgcaatcaaatttgataaaatatctgtgtaaattatcttgcactacttatatactgtctttatattcttagaat |
27597579 |
T |
|
| Q |
232 |
atttagtatgaaacggcttatcgaaggttaacttatactaacacgtgtcaaattatcttagccttctggtttggccaaatttccttttgtcatttcaaat |
331 |
Q |
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| T |
27597580 |
atttagtatgaaacggcttatcgaaggttaacttatactaacacgtgtcaaattatcttagccttctggtttggccaaatttccttttgtcatttcaaat |
27597679 |
T |
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| Q |
332 |
atttaaaagtaatcttgtctcttcaaacttttgaatatgcaaattaaacctttgtatatatctaaaagaaagttttattttattttaaaagaaagttacc |
431 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27597680 |
atttaaaagtaatcttgtctcttcaaacttttgaatctgcaaattaaacctttgtatatatctaaaagaaagttttattttattttaaaagaaagttacc |
27597779 |
T |
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| Q |
432 |
tgtatgannnnnnnaagcatattatatgaatgttttttc |
470 |
Q |
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| T |
27597780 |
tgtatgatttttttaagcatattatatgaatattttttc |
27597818 |
T |
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