View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_high_1 (Length: 820)
Name: NF20726_high_1
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 731; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 731; E-Value: 0
Query Start/End: Original strand, 18 - 811
Target Start/End: Original strand, 34976422 - 34977232
Alignment:
| Q |
18 |
gatagagtgtgagataataattatcaatgttactaccatataggtgaatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatc |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976422 |
gataaagtgtgagataataattatcaatgttactaccatataggtgaatctcttttctcaaagaggataataggttcagttctgtaccgaatacttcatc |
34976521 |
T |
|
| Q |
118 |
agggtccttaggattgtcccatttctctccttcagttattatgtttttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976522 |
agggtccttaggattgtcccatttctctccttcagttattatgtttttcaatattccaccatccttggtaatgtccttgacacttgtccaagacagcaac |
34976621 |
T |
|
| Q |
218 |
tccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctgggggtattgtgaaaatggcattttcac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976622 |
tccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctgggggtattgtgaaaatggcattttcac |
34976721 |
T |
|
| Q |
318 |
ccttcttcatggttttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaa |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976722 |
ccttcttcatggttttgataccttcatcccaccctttgatcacttgcccttcattgacaaaaacaataacaaattaactgcagttcattgatgaagtaaa |
34976821 |
T |
|
| Q |
418 |
gtcctaagagatctcagtctttggataaagttttatgaaacagagacacggatgttggacacgataaaacactgacaatgaaaataattgtaacacacat |
517 |
Q |
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||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
34976822 |
gtcctaagagatctcagtcttcggatgaagttttatgaaacagagacacggatgttggaaacgataaaacactgacaatgaaaataattgtaacacacat |
34976921 |
T |
|
| Q |
518 |
atcaatcacccagacatatcttcaatctaaagtgtttgtacg-----------------atatacaaaaatcacatttgtgtaaataaaagatctatttt |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34976922 |
atcaatcacccagacatatcttcaatctaaagtgtctgtacgataacttaaccaatacaatatacaaaaatcacatttgtgtaaataaaagatctatttt |
34977021 |
T |
|
| Q |
601 |
aatatgatactatcattgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttaca |
700 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977022 |
aatatgatactatcattgtatagttcatttcctcctcatacacagcaacatgattaaaaacattgaatattcatcattttatacctcgacaaaatttaca |
34977121 |
T |
|
| Q |
701 |
agaggaaaacagaaagttaaatattaccttgaccaagcttaaatttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaat |
800 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34977122 |
agaggaaaacagaaagttaaatattaccttgaccaagcttaaacttgaaagtggtacccctatcacggctcgagtcaaatttggttccatcaagcaaaat |
34977221 |
T |
|
| Q |
801 |
tccagtataat |
811 |
Q |
| |
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||||||||||| |
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| T |
34977222 |
tccagtataat |
34977232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 191 - 367
Target Start/End: Original strand, 3496312 - 3496488
Alignment:
| Q |
191 |
tccttgacacttgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctg |
290 |
Q |
| |
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||||| ||||| ||||||||||||| ||| |||||||| || |||| || || || |||||||| |||||||| |||||||| |||||||| ||||| | |
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| T |
3496312 |
tccttcacactagtccaagacagcagctcaacatcaaattgcagagtagcattaggaggaatagttggaggagaaccagattcaccataagctaactcag |
3496411 |
T |
|
| Q |
291 |
ggggtattgtgaaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgccct |
367 |
Q |
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| || || ||||||| ||||||||||| |||||||||||||| || || |||||||| ||||| || ||||||||| |
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| T |
3496412 |
gtggaatggtgaaaagagcattttcacctttcttcatggttttaattccctcatcccatcctttaataacttgccct |
3496488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 102 - 367
Target Start/End: Original strand, 18848789 - 18849054
Alignment:
| Q |
102 |
taccgaatacttcatcagggtccttaggattgtcccatttctctccttcagttattatgtttttcaatattccaccatccttggtaatgtccttgacact |
201 |
Q |
| |
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|||| |||||||||||||| ||||| || || ||||||||||| || || | | ||| | || ||||| |||||||| || |||||||| ||||| |
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| T |
18848789 |
tacccaatacttcatcaggatccttggggttctcccatttctccccctctttaagtatcctcttaaatataccaccatctttacatatgtccttcacact |
18848888 |
T |
|
| Q |
202 |
tgtccaagacagcaactccacatcaaactgaagagctgcgtttgggggaatagtgggaggagacccagattctccataagccaactctgggggtattgtg |
301 |
Q |
| |
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|||||||||| || ||| |||||||| || || | || || || ||||| || ||||| || |||||||| |||||||| | ||| || || || ||| |
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| T |
18848889 |
ggtccaagacaacatctcaacatcaaattggagcgtcgcattaggaggaattgtcggaggtgaaccagattcaccataagctagctcgggagggatggtg |
18848988 |
T |
|
| Q |
302 |
aaaatggcattttcacccttcttcatggttttgataccttcatcccaccctttgatcacttgccct |
367 |
Q |
| |
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|| | ||||||||||| |||||||||||||| |||||||||||||| |||| || ||||||||| |
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| T |
18848989 |
aagagtgcattttcacctttcttcatggttttaataccttcatcccatccttgaattacttgccct |
18849054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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