View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20726_high_11 (Length: 285)

Name: NF20726_high_11
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20726_high_11
NF20726_high_11
[»] scaffold0257 (1 HSPs)
scaffold0257 (1-270)||(19918-20187)
[»] chr2 (1 HSPs)
chr2 (1-177)||(8021655-8021830)
[»] chr3 (10 HSPs)
chr3 (1-92)||(28163467-28163558)
chr3 (1-103)||(17743718-17743820)
chr3 (1-103)||(19045038-19045140)
chr3 (1-103)||(28187477-28187579)
chr3 (2-92)||(28060218-28060308)
chr3 (2-92)||(28070643-28070733)
chr3 (1-103)||(11422042-11422143)
chr3 (1-49)||(26126307-26126355)
chr3 (1-49)||(26176358-26176406)
chr3 (1-49)||(28508237-28508285)
[»] scaffold0922 (1 HSPs)
scaffold0922 (1-103)||(2556-2658)
[»] scaffold0043 (1 HSPs)
scaffold0043 (214-270)||(49358-49414)


Alignment Details
Target: scaffold0257 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 270
Target Start/End: Original strand, 19918 - 20187
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||| |    
T  19918 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcacaaattttacaaactcggggtgctttaagtgatcctattggttattaaa 20017  T
Q  101 ctannnnnnnncgttgcattctagaagttccctgattttctttatccttgaatattttatttattgctcgaacatacatttatatatcaaccagaacctt 200  Q
    |||        ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  20018 ctattttttttcgttgcattctagcagttccctgattttctttatccttgaatattttatttattgctcgaacatacatttatatatcaaccaaaacctt 20117  T
Q  201 acaattgcagtctagcaaagcaatgccttcattttgtttgcatttaattgtagtaatctcttagcaaaaa 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20118 acaattgcagtctagcaaagcaatgccttcattttgtttgcatttaattgtagtaatctcttagcaaaaa 20187  T

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Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 177
Target Start/End: Original strand, 8021655 - 8021830
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||| ||| ||| ||||||||||||||||| || |||||||||    
T  8021655 caattggcttcctctgaagctgatttgcagagcatcactcaacaggaggcacaaattttacgaacacgggatgctttaagtgatcctcttagttattaga 8021754  T
Q  101 ctannnnnnnncgttgcattctagaagttccctgattttctttatccttgaatattttatttattgctcgaacatac 177  Q
    |||        |||||||||| |   |||||||| |||||||||||||| |||||||||||||||||||| ||||||    
T  8021755 cta-tttttttcgttgcattcaatttgttccctgcttttctttatccttcaatattttatttattgctcggacatac 8021830  T

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Target: chr3 (Bit Score: 72; Significance: 8e-33; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 28163467 - 28163558
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattgg 92  Q
    ||||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||  |||||||||||||||||||||    
T  28163467 caattggcttcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcgggctgctttaagtgatcctattgg 28163558  T

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Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 17743820 - 17743718
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  17743820 caattggattcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcgagctgctttaagtgatcctattggctattaga 17743721  T
Q  101 cta 103  Q
    |||    
T  17743720 cta 17743718  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Complemental strand, 19045140 - 19045038
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    ||||||| ||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||   ||||||||||||||||||||| |||||||    
T  19045140 caattggattcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcgagctgctttaagtgatcctattggctattaga 19045041  T
Q  101 cta 103  Q
    |||    
T  19045040 cta 19045038  T

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Target: chr3; HSP #4
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 28187477 - 28187579
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||| |||||||||| ||||||  ||||||||||||||||||||| |||||||    
T  28187477 caattggcttcctgtgaagctgttttgcagaacatcactcaacaggaggcacaaattttacatactcgggctgctttaagtgatcctattggctattaga 28187576  T
Q  101 cta 103  Q
    |||    
T  28187577 cta 28187579  T

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Target: chr3; HSP #5
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 28060218 - 28060308
Alignment:
Q  2 aattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattgg 92  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||  ||||||| |||||||||||||    
T  28060218 aattggcttcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcgggctgctttatgtgatcctattgg 28060308  T

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Target: chr3; HSP #6
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 28070643 - 28070733
Alignment:
Q  2 aattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattgg 92  Q
    |||||||||||||||||||||||||||||| |||||||||||| |||||| |||||||||||||||||  ||||||| |||||||||||||    
T  28070643 aattggcttcctctgaagctgttttgcagaacatcactcaacaggaggcacaaattttacaaactcgggctgctttatgtgatcctattgg 28070733  T

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Target: chr3; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 11422042 - 11422143
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    |||||||||||||| ||||||||||| |||||||||||||| || |||||| || ||||| ||||||||  |||||||||||||||||| || ||||| |    
T  11422042 caattggcttcctccgaagctgttttacagagcatcactcagcaggaggcacaatttttagaaactcgg-ctgctttaagtgatcctatcggctattaaa 11422140  T
Q  101 cta 103  Q
    |||    
T  11422141 cta 11422143  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26126355 - 26126307
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagagg 49  Q
    |||||||| |||||| ||||||||||| |||| |||| |||||||||||    
T  26126355 caattggcatcctctcaagctgttttggagagtatcaatcaacaagagg 26126307  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 26176406 - 26176358
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagagg 49  Q
    |||||||| |||||| ||||||||||| |||| |||| |||||||||||    
T  26176406 caattggcatcctctcaagctgttttggagagtatcaatcaacaagagg 26176358  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 28508285 - 28508237
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagagg 49  Q
    |||||| | |||||||||||||||||| |||| |||| |||||||||||    
T  28508285 caattgacatcctctgaagctgttttggagagtatcattcaacaagagg 28508237  T

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Target: scaffold0922 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: scaffold0922
Description:

Target: scaffold0922; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 103
Target Start/End: Original strand, 2556 - 2658
Alignment:
Q  1 caattggcttcctctgaagctgttttgcagagcatcactcaacaagaggcaaaaattttacaaactcggaatgctttaagtgatcctattggttattaga 100  Q
    ||||||||||||| ||||||||||||||||| |||||||||||| |||||| | |||||| |||| | |  ||||||||||||||||||||| |||||||    
T  2556 caattggcttcctttgaagctgttttgcagaacatcactcaacaggaggcacagattttagaaacgcaggctgctttaagtgatcctattggctattaga 2655  T
Q  101 cta 103  Q
    |||    
T  2656 cta 2658  T

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Target: scaffold0043 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 270
Target Start/End: Complemental strand, 49414 - 49358
Alignment:
Q  214 agcaaagcaatgccttcattttgtttgcatttaattgtagtaatctcttagcaaaaa 270  Q
    |||||||||| ||||||||||||| |||||| ||||||| |||| |||| |||||||    
T  49414 agcaaagcaaggccttcattttgtatgcattgaattgtactaatatcttggcaaaaa 49358  T

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