View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_high_2 (Length: 451)
Name: NF20726_high_2
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 42468409 - 42468037
Alignment:
| Q |
1 |
tgttatatacggaccagattgatagtaagtagttaagtataagggatcaacttaa--------tagagttgaga--acttttttgacatatttgagagtg |
90 |
Q |
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| T |
42468409 |
tgttatatacggaccagattgatagtaagtagttaagtataagggatcaacttaacaacttaatagagttgagagaacttttttgacatatttgagagtg |
42468310 |
T |
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| Q |
91 |
tccgacaaaatcagagacta-------------------tcttctatcttacttgtttacaacgtttgggagcttactggcaatttacaaatttttcaca |
171 |
Q |
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| T |
42468309 |
tccgacaaaatcagagactaatttggtgatatagtcgtatcttctatcttacttgtttacaacgtttgagagcttactggcaatttacaaatttttcaca |
42468210 |
T |
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| Q |
172 |
gccagtttgcaatatatgatgattttgatgacgatgctgttgtggatgttaagatgcctactggactgtataatggttctgtctcatgtaaagtttcaca |
271 |
Q |
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| T |
42468209 |
gccagtttgcaacatatgatgattttgatgacgatgctgttgtggatgttaagatgcctactggactgtataatggttctgtctcatgtaaagtttcaca |
42468110 |
T |
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| Q |
272 |
gtttattaaggctaacaggaagaaaccaaaggtactaaaattaagattttatagatagatacatgttatctgt |
344 |
Q |
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| T |
42468109 |
gtttattaaggctaacaagaagaaactaaaggtactaaaattaagattttattgatagatacatgttatctgt |
42468037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 346 - 437
Target Start/End: Original strand, 42468673 - 42468764
Alignment:
| Q |
346 |
ctcctccccatcatacttaaacaccactctttcaatgctttgcggcggtggattgtgaaacaataaagaaataaagtattaggttaattatg |
437 |
Q |
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| T |
42468673 |
ctcctccgcatcatacttaaacaccactctttcaatgctttgcggcggtggattgtgaaacaataaagaaataaagtattaggttaattatg |
42468764 |
T |
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