View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_high_3 (Length: 451)
Name: NF20726_high_3
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 138; Significance: 6e-72; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 292 - 437
Target Start/End: Original strand, 42468619 - 42468764
Alignment:
| Q |
292 |
aaaatcaaaatcaaagattgagatgtataattaacctgaaaacgattccctcctctcctccccatcatacttaaacaccactctttcaatgctttgcggc |
391 |
Q |
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| T |
42468619 |
aaaatcaaaatcaaagattgagatgtataattaacctgaaaacgattcactcctctcctccgcatcatacttaaacaccactctttcaatgctttgcggc |
42468718 |
T |
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| Q |
392 |
ggtggattgtgaaacaataaagaaataaagtattaggttaattatg |
437 |
Q |
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| T |
42468719 |
ggtggattgtgaaacaataaagaaataaagtattaggttaattatg |
42468764 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 107 - 255
Target Start/End: Original strand, 42468456 - 42468604
Alignment:
| Q |
107 |
tggtttggtcaaaataaacaagagtaaagacatacccattagctggtgtaaaacgctttagagaattactaggcttaggaacaatgtgactgtaaaagcc |
206 |
Q |
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| T |
42468456 |
tggtttggtgaaaataaacaagagtaaagacatacccattagttggtgtaaaacgcttaagagaattactgggcttaggagcaatgtgactgtaaaagcc |
42468555 |
T |
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| Q |
207 |
cggcaaaccaatgtgatgatccttctgccatgttaacgtggttcaacaa |
255 |
Q |
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| T |
42468556 |
ctgcaaaccaatgtgatgatccttcagccatgttaacgtggttcaacaa |
42468604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 42468385 - 42468456
Alignment:
| Q |
1 |
ctatcaatctggtccgtatataacaacttattatcaatttactcactaacattaccataaaatttgacctat |
72 |
Q |
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| T |
42468385 |
ctatcaatctggtccgtatataacaacttattatcaatttactccctaacattaccatcaaatttgacctat |
42468456 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 138 - 200
Target Start/End: Complemental strand, 34223351 - 34223289
Alignment:
| Q |
138 |
atacccattagctggtgtaaaacgctttagagaattactaggcttaggaacaatgtgactgta |
200 |
Q |
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| T |
34223351 |
atacccattagctggtctcgaacgcttttgagaattactaggctttggagcaatttgactgta |
34223289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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