View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_high_7 (Length: 318)
Name: NF20726_high_7
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 18 - 273
Target Start/End: Complemental strand, 24293034 - 24292779
Alignment:
| Q |
18 |
ttaaaagtgctgaattgnnnnnnnncttaaacgtaaagaatatgaatttaactttgacagaaatgtaatggcatgcttcaaattgacagagttgacgatc |
117 |
Q |
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| T |
24293034 |
ttaaaagtgctgaattgaaaaaaaacttaaacgtaaagaatatgaatttaactttgacagaaatgtaatggcatgcttcaaattgacagagttgacgatc |
24292935 |
T |
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| Q |
118 |
gtttattgtagacttgatttcataaaacatcaagcaacattgattatagagccttcaaagactatttaaaagaaatgaatcgctagtgacttcctttttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24292934 |
gtttattgtagacttgatttcataaaacatcaagcagcattgattatagagccttcaaagactatttaaaagaaatgaatcgctagtgacttccattttt |
24292835 |
T |
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| Q |
218 |
gccatgaaatccgaacagaaaacaaattttctttgatacttgggtttgacagaaag |
273 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24292834 |
gccatgaaatccgaacagaaaacaaattttctttgatacttgggtttgacagaaag |
24292779 |
T |
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