View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20726_high_8 (Length: 306)
Name: NF20726_high_8
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_high_8 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 19 - 286
Target Start/End: Original strand, 8882250 - 8882517
Alignment:
| Q |
19 |
gaacaaaacacagagaaaaacaaatttgaatccaaggagcaactaagattaatctaagcatcttaacattttgcctaaaaaatcatttaaactaatgttt |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
8882250 |
gaacaaaacacagagaaaaacaaatttgaatccaaggagcaactaagattagtctaagcatcttaatattttgcctaaaaaatcatttaaactaatgttt |
8882349 |
T |
|
| Q |
119 |
tagaaaccaaattggacatcctagtaccgatgcatagctcaaccactctaactattcaaagcaacataaaactactattaatatttgtatttaaattaca |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8882350 |
tagaaaccaaattggacatcctagtaccgatgcatagctcaaccactctaactattcgaagcaacataaaactactattaatatttgtatttaaattaca |
8882449 |
T |
|
| Q |
219 |
atttagctctgtatatatagagttgtaagtaaaagttttaagagtcttctctgtatacaatatatctc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8882450 |
atttagctctgtatatatagagttgtaagtaaaagttttaagagtcttctctgtatacaatatatctc |
8882517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University