View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_low_13 (Length: 242)
Name: NF20726_low_13
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 114; Significance: 6e-58; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 113 - 226
Target Start/End: Original strand, 2432867 - 2432980
Alignment:
| Q |
113 |
ttgtagagcatgtgctgccaaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgact |
212 |
Q |
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| T |
2432867 |
ttgtagagcatgtgctgccaaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgact |
2432966 |
T |
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| Q |
213 |
taccatgacgaatt |
226 |
Q |
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| T |
2432967 |
taccatgacgaatt |
2432980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 131 - 226
Target Start/End: Complemental strand, 2353553 - 2353458
Alignment:
| Q |
131 |
caaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgacttaccatgacgaatt |
226 |
Q |
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| T |
2353553 |
caaagtctaataatagttcaaaagtccaatataatttcaagtcaagtatagtataataatttctacttaattttatgtgacttaccatgacgaatt |
2353458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 16 - 73
Target Start/End: Original strand, 2432770 - 2432827
Alignment:
| Q |
16 |
aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat |
73 |
Q |
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| T |
2432770 |
aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat |
2432827 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 16 - 73
Target Start/End: Complemental strand, 2353657 - 2353600
Alignment:
| Q |
16 |
aatatctctgtgctttgttctgacgggatctagttggaaaggaacacacaagtttaat |
73 |
Q |
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| T |
2353657 |
aatatctttgtgctttgttctgacggaatctagttggaaaggaacacacaagtttaat |
2353600 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 155
Target Start/End: Complemental strand, 2354235 - 2354198
Alignment:
| Q |
119 |
agcatgtgctgccaaa-gtctaataatagttcaaaagt |
155 |
Q |
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| T |
2354235 |
agcatgtgctgccaaaagtctaataatagttcaaaagt |
2354198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 2432521 - 2432562
Alignment:
| Q |
180 |
agtataataatttctacttaattttatgtgacttaccatgac |
221 |
Q |
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| T |
2432521 |
agtatgataatttctacttaattttatgagacttaccgtgac |
2432562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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