View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_low_15 (Length: 226)
Name: NF20726_low_15
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 23 - 210
Target Start/End: Complemental strand, 8286135 - 8285948
Alignment:
| Q |
23 |
taccaagtatatctgaggggatttttccattgcaaaaacgaccagttgggacaccaccttgaaaatctttgccataaggagggaaattgcatttgaccaa |
122 |
Q |
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| T |
8286135 |
taccaagtatatctgaggggatttttccattgcaaaaacgaccagttgggacaccaccttgaaaatctttgccataaggagggaaattgcatttgaccaa |
8286036 |
T |
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| Q |
123 |
agttttgaggtcgttattgtttcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtggaagcttt |
210 |
Q |
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| T |
8286035 |
agttttgaggtcgttattgtttcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtggaagcttt |
8285948 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 8231072 - 8231001
Alignment:
| Q |
135 |
gttattgtttcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtggaag |
206 |
Q |
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| T |
8231072 |
gttattgttacctgtatccacgatagaatctccaaacaccaacactgctggaactgaaacatttggtggaag |
8231001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 44 - 203
Target Start/End: Complemental strand, 53294800 - 53294641
Alignment:
| Q |
44 |
tttttccattgcaaaaacgaccagttgggacaccaccttgaaaatctttgccataaggagggaaattgcatttgaccaaagttttgaggtcgttattgtt |
143 |
Q |
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| T |
53294800 |
tttttccgttgcaaaatcgaccagttggaatccctccctcaaaatcttgaccataaggagggaaattgcacttgacgattgttttgatgttattgttatt |
53294701 |
T |
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| Q |
144 |
tcctgaatcaactattgaatctccaaatgctatcactgctggaactgtaacatttggtgg |
203 |
Q |
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| T |
53294700 |
tcctgtatccatgatagaatctccaaaagctatgagtgcaggaattgtaacatttggtgg |
53294641 |
T |
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