View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_low_4 (Length: 425)
Name: NF20726_low_4
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 54979881 - 54979585
Alignment:
| Q |
1 |
tcatactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctcagtctttcgaaggacgaagctcta |
100 |
Q |
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| T |
54979881 |
tcatactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctcagtctatcgaaggacgaagctcta |
54979782 |
T |
|
| Q |
101 |
gaaaaaccatacacggcttcgatgggaatgtgcgtcttcaagaaatacttcttaatctattaaggtacagataatgttgtatcaaaatgttgggcttttt |
200 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
54979781 |
gaaaaaccatacacggcttcgatgggagtgtgcgtcttcaagaaatacttcttaatctattaaggtacagataatgttgtatcaaaatgttgggcttttt |
54979682 |
T |
|
| Q |
201 |
cttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctataaaggaattctatggaagttatgacag |
297 |
Q |
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| T |
54979681 |
cttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctataaaggaattctatggaagttatgacag |
54979585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 2 - 270
Target Start/End: Complemental strand, 54971463 - 54971193
Alignment:
| Q |
2 |
catactacaagtttcaagaattagattgacagctaatactgcttcatgatttagcaagtggatacagccattctcagtctttcgaaggacgaagctctag |
101 |
Q |
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||||||||||||||||||| ||||| | ||| ||||||||||||||||| |||||||||||||| || ||||| ||||||| |||||||||||||||| |
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| T |
54971463 |
catactacaagtttcaagagttagactcaca--taatactgcttcatgataaagcaagtggatacaaccgttctcggtctttcaaaggacgaagctctag |
54971366 |
T |
|
| Q |
102 |
aaaaaccatacacggcttcgatgggaatgtgcgtcttcaagaaa----tacttcttaatctattaaggtacagataatgttgtatcaaaatgttgggctt |
197 |
Q |
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| T |
54971365 |
aaaaaccatacattgcttcaatgggagtgtacgtcttcaagaaagagatacttcttaatttattaaggtacagataatgttgtatcaaaatgttaggttt |
54971266 |
T |
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| Q |
198 |
tttcttgtgtctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctat |
270 |
Q |
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| T |
54971265 |
tttcttgtggctcacgtcatctatcaatgtactctttaaaatacagaaatatgcacaaatatgttgatcctat |
54971193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 327 - 409
Target Start/End: Complemental strand, 54978359 - 54978277
Alignment:
| Q |
327 |
acatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatag |
409 |
Q |
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| T |
54978359 |
acatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatcacgcatcaattcagagtcacaaccccaaatag |
54978277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 326 - 378
Target Start/End: Original strand, 12195887 - 12195939
Alignment:
| Q |
326 |
tacatatcttgaaatcacactcacaaggaagaatatcaaaaccgcattcatca |
378 |
Q |
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|||| |||||||||||||||||||||||||| || || ||||| | ||||||| |
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| T |
12195887 |
tacaaatcttgaaatcacactcacaaggaagtatttccaaacctctttcatca |
12195939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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