View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_low_6 (Length: 355)
Name: NF20726_low_6
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 345
Target Start/End: Original strand, 46337865 - 46338209
Alignment:
| Q |
1 |
tctgagatgataacccatattgttggtatatgtagtatcaattaatccttatgagctctccttaaactgtatagtccaatacttacacgacctcaagatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337865 |
tctgagatgataacccatattgttggtatatgtagtatcaattaatccttatgagctctccttaaactgtatagtccaatacttacacgacctcaagatc |
46337964 |
T |
|
| Q |
101 |
tctctcattctgatatgatttggttcattcatgtgtcgtttgcctaaaagtatatcaggagccgctcattgcacgtgccatgcccatcgacgatcacccc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46337965 |
tctctcattctgatatgatttggttcattcatgtgtcgtttgcctaaaagtatatcaggagccgctcattgcacgtgccatgcccatcgacgatcacccc |
46338064 |
T |
|
| Q |
201 |
gtcctcgccagcctcaggtgtcacaacatgtaccattctaacatatnnnnnnntatattattattaatacttaaaatgaatttggatcctgtctcacaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46338065 |
gtcctcgccagcctcaggtgtcacaacatgtaccattctaacatataaaaaaatatattattattaatacttaaaatgaatttggatcctgtctcacaaa |
46338164 |
T |
|
| Q |
301 |
acatctctgcaactctcccacattatttttctatctatctctctg |
345 |
Q |
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| T |
46338165 |
acatctctgcaactctcccacattatttttctatctatctctctg |
46338209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 9909192 - 9909015
Alignment:
| Q |
20 |
ttgttggtatatgtagtatcaattaatccttatgagctctccttaaactgtatagtccaatacttacacgacctcaagatctctctcattctgatatgat |
119 |
Q |
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| T |
9909192 |
ttgttggtataggtagtaccaattaatcattataaaccctccttcaaccatatagtctcatacttatacgatttcaggatccctctcattctgatatgaa |
9909093 |
T |
|
| Q |
120 |
ttggttcattcatgtgtcgtttgcctaaaagtatatcaggagccgctcattgcacgtgccatgcccatcgacgatcac |
197 |
Q |
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| T |
9909092 |
ttggttcattcatttgtcaatttcctaaaagcatgtcaggagcagctcattgcatgtgccatgttcatcgacgatcac |
9909015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 27190711 - 27190756
Alignment:
| Q |
91 |
cctcaagatctctctcattctgatatgatttggttcattcatgtgt |
136 |
Q |
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| T |
27190711 |
cctcaagatccctcttattctgatatgatttggtttattcatgtgt |
27190756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 91 - 136
Target Start/End: Original strand, 27840525 - 27840570
Alignment:
| Q |
91 |
cctcaagatctctctcattctgatatgatttggttcattcatgtgt |
136 |
Q |
| |
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| T |
27840525 |
cctcaagatccctcttattctgatatgatttggtttattcatgtgt |
27840570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 126
Target Start/End: Original strand, 10927044 - 10927098
Alignment:
| Q |
72 |
tagtccaatacttacacgacctcaagatctctctcattctgatatgatttggttc |
126 |
Q |
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|||||| |||| |||||||||||| |||| ||||||||||||| ||||| ||||| |
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| T |
10927044 |
tagtcccatacctacacgacctcaggatccctctcattctgatgtgattcggttc |
10927098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 25230294 - 25230400
Alignment:
| Q |
20 |
ttgttggtatatgtagtatcaattaatccttatgagctctccttaaactgtatagtccaatacttacacgacctcaagatctctctcattctgatatgat |
119 |
Q |
| |
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|||||| |||| |||||| ||| |||| ||||| ||| ||||| ||| | |||||| |||| |||||||||||| |||| ||||| ||| ||| |||| |
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| T |
25230294 |
ttgttgatataggtagtaccaaataattcttataagccttccttcaaccatgtagtcccatacctacacgacctcaggatccctctccttccgatgtgat |
25230393 |
T |
|
| Q |
120 |
ttggttc |
126 |
Q |
| |
|
||||||| |
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|
| T |
25230394 |
ttggttc |
25230400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 126
Target Start/End: Original strand, 25237881 - 25237987
Alignment:
| Q |
20 |
ttgttggtatatgtagtatcaattaatccttatgagctctccttaaactgtatagtccaatacttacacgacctcaagatctctctcattctgatatgat |
119 |
Q |
| |
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|||||| |||| |||||| ||| |||| ||||| ||| ||||| ||| | |||||| |||| |||||||||||| |||| ||||| ||| ||| |||| |
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| T |
25237881 |
ttgttgatataggtagtaccaaataattcttataagccttccttcaaccatgtagtcccatacctacacgacctcaggatccctctccttccgatgtgat |
25237980 |
T |
|
| Q |
120 |
ttggttc |
126 |
Q |
| |
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||||||| |
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|
| T |
25237981 |
ttggttc |
25237987 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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