View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20726_low_9 (Length: 303)
Name: NF20726_low_9
Description: NF20726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20726_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 266; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 20 - 289
Target Start/End: Original strand, 32447552 - 32447821
Alignment:
| Q |
20 |
ttgaccacctgaattgttttatatttagtaataatcaactagaagcattaacccgtgtcgcaacgcaacacgggtctggataaagtgtcacgtgtctaat |
119 |
Q |
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| T |
32447552 |
ttgaccacctgaattgttttatatttagtaataatcaactagaagcattaacccgtgtcgcaacgcaacacgggtctggataaagtgtcacgtgtctaat |
32447651 |
T |
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| Q |
120 |
acaagaaacatgtaagttcaagggacatagttcaaatttgtacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatc |
219 |
Q |
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| T |
32447652 |
acaagaaacatgtaagttcaagggacatggttcaaatttgtacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatc |
32447751 |
T |
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| Q |
220 |
tgacccttcttgaggtctggtcttaggtagttcacccatctcaatctacaacttttcccatttcttctca |
289 |
Q |
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| T |
32447752 |
tgacccttcttgaggtctggtcttaggtagttcacccatctcaatctacaacttttcccatttcttctca |
32447821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 160 - 281
Target Start/End: Original strand, 17118580 - 17118701
Alignment:
| Q |
160 |
tacctgtttccccacctagcatgtagctctaggattatgctttcttcttgttgtgttatctgacccttcttgaggtctggtcttaggtagttcacccatc |
259 |
Q |
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| T |
17118580 |
tacctgtttccccacctagcatgaagctctaatattatgctttcttcttgtggtgttatttgaccccttttgagatctggtcttagataattcacccacc |
17118679 |
T |
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| Q |
260 |
tcaatctacaacttttcccatt |
281 |
Q |
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| T |
17118680 |
tcaatctgcaactctttccatt |
17118701 |
T |
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