View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20727_high_2 (Length: 242)
Name: NF20727_high_2
Description: NF20727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20727_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 239
Target Start/End: Original strand, 8860410 - 8860624
Alignment:
| Q |
19 |
ctaacccaccaaatatattgttaaaaacacatcacacacagagacaaaatataaaagcaaaagacatgttaatagagaccctacacccattaggattggt |
118 |
Q |
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| T |
8860410 |
ctaacccaccaaatatattgttaaaaacacatcacacacagagacaaaatataaaagcaaaagacatgttaatagaggccctacacccattaggattggt |
8860509 |
T |
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| Q |
119 |
ttcttcatcattcaagttcaatatttctagctagcatggacagcacttgatatatactcattgaaggccatagagaattagtacgtacgtataacttact |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
8860510 |
ttcttcatcattcaagttcaatatttctagctagcatggacagcacttg--atatactcattgaaggccatagagaatta----gtacgtataacttact |
8860603 |
T |
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| Q |
219 |
aaagaatatgtttggtttcat |
239 |
Q |
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||||||||||||||||||||| |
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| T |
8860604 |
aaagaatatgtttggtttcat |
8860624 |
T |
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