View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20727_low_6 (Length: 209)
Name: NF20727_low_6
Description: NF20727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20727_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 133; Significance: 2e-69; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 23684309 - 23684135
Alignment:
| Q |
17 |
aatattactgatagataacaatataagagatggcaaagatgagactgcaccaaaacaact--cactgcatattccatgttactagagttaagccaaaaga |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23684309 |
aatattactgatagataacaatataagagatggcaaagatgagactgcaccaaaacaactcacactgcatattccatgttactagagttaagccaaaaga |
23684210 |
T |
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| Q |
115 |
agatctaaagcaaaagatataaccnnnnnnnnngtcaatcaaacatgcattccattaatggaaagcatattagtac |
190 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23684209 |
agatctaaagcaaaagatataacc-ttttttatgtcaatcaaacatgcattccattaatggaaagcatattagtac |
23684135 |
T |
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Target: chr1; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 17 - 135
Target Start/End: Original strand, 19566879 - 19566999
Alignment:
| Q |
17 |
aatattactgatagataacaatataagagatggcaaagatgagactgcaccaaaacaact--cactgcatattccatgttactagagttaagccaaaaga |
114 |
Q |
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||||||||| |||||||||||||||| |||| ||||| |||||||| ||||| ||||||| |||| ||||||||||| ||||| |||||| | ||| | |
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| T |
19566879 |
aatattactaatagataacaatataatagatagcaaatatgagactacaccataacaactcacactacatattccatgctactaatgttaagaccaaaaa |
19566978 |
T |
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| Q |
115 |
agatctaaagcaaaagatata |
135 |
Q |
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|||| |||||||||||||||| |
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| T |
19566979 |
agatataaagcaaaagatata |
19566999 |
T |
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