View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20728_high_11 (Length: 233)
Name: NF20728_high_11
Description: NF20728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20728_high_11 |
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Alignment Details
Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 42219567 - 42219773
Alignment:
| Q |
19 |
catgatgctgttatacaactgcagttctgtaattagttggaacaagagtacctctatgacttatgtgatgtatttgggagattggtgcttaatgcagttt |
118 |
Q |
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| T |
42219567 |
catgatgctgttatacaactgcagttctgtaattagttggaacaagagtacctctatgacttatgtgatgtatttgggagattggtgcttaatgcagttt |
42219666 |
T |
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| Q |
119 |
attttggttgcctgaaacttattcagcctgtaagctatagttggttagcaactaactaaaggctaattgagtttagctatgtttcatcctttaatatttt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42219667 |
attttggttgcctgaaacttattcagcctgtaagctatagttggttagcaactaactaaaggctaattgagtttagctatgtttcatcctttaatatttt |
42219766 |
T |
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| Q |
219 |
cccacag |
225 |
Q |
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||||||| |
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| T |
42219767 |
cccacag |
42219773 |
T |
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