View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20728_high_7 (Length: 335)
Name: NF20728_high_7
Description: NF20728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20728_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 30 - 318
Target Start/End: Complemental strand, 3750733 - 3750429
Alignment:
| Q |
30 |
gcttctcaattaagggaaatatgtattggtattcagagtttgaccgcgagttaaatagaatataataaaatattgttctatcgaaatcaagcatcgccat |
129 |
Q |
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| T |
3750733 |
gcttctcaattaggggaaatatgtattggtattcagagtttgaccgcgagttaaatagagtataataaaatattgttctatcgaaatcaagcatcgccat |
3750634 |
T |
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| Q |
130 |
cgatttcaccttaaccgaaacatattatgtaatcttagtcaacattcttctta----------------aatacttgattttcaattaataatcaattta |
213 |
Q |
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| T |
3750633 |
cgatttcaccttaaccgaaacatattatgtaatcttagtcaacattcttcttagtcaacattcttcttaaatacttgattttcaattaataatcaattta |
3750534 |
T |
|
| Q |
214 |
atcatagacaacattaattttaaaaataatagaatatgaactctttttatcaaataaaaatttatattattggaggattgagacattgtcttggactctt |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3750533 |
atcatagacaacattaattttaaaaataatagaatatgaactctttttatcaaataaaaatttatattattggaggattgagacattgtcttggactctt |
3750434 |
T |
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| Q |
314 |
gctgg |
318 |
Q |
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||||| |
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| T |
3750433 |
gctgg |
3750429 |
T |
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