View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20728_high_8 (Length: 312)
Name: NF20728_high_8
Description: NF20728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20728_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 303
Target Start/End: Original strand, 43071598 - 43071883
Alignment:
| Q |
18 |
cttcatgcactcataatacttctcaaatcctttccttgacacatacatgcagagagaatctacttcggggaaaatccaaaatcaacattaggccttacat |
117 |
Q |
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| T |
43071598 |
cttcatgcactcataatacttctcaaatcctttccttgacacatacatgcagagagaatctacttcggggaaaatccaaaatcaacattaggccttacat |
43071697 |
T |
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| Q |
118 |
ttcccacttttgtcaacccattcatcatagatgatgactgctacagtctaacctgcagaagtaaaagagttacacatgataagaggttttgcttcagtaa |
217 |
Q |
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| T |
43071698 |
ttcccacttttgtcaacccattcatcatagatgatgactgctacagtctaacctgcagaagtaaaagagttacacatgataagaggttttgcttcagtaa |
43071797 |
T |
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| Q |
218 |
aaatgaaagtcattaggctgagcataactttaagagggcagagattaaaacacagaatggaaagagtttcagtagaactgaatatt |
303 |
Q |
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| T |
43071798 |
aaatgaaagtcattaggctgagcataactttaagagggcagggattaaaggacagaatggaaagagtttcagtagaactgaatatt |
43071883 |
T |
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