View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20728_high_9 (Length: 248)
Name: NF20728_high_9
Description: NF20728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20728_high_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 43071875 - 43072113
Alignment:
| Q |
1 |
ctgaatattgatggagaactggtacagaacagcccgctcataaattccagttgagaatatatgtagtctaagtaaacaatgtgttacatcataaaatgtt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43071875 |
ctgaatattgatggagaactggtacggaacagcccgctcataaattccagttgagaatacatgtagtctaagtaaacaatgtgttacatcataaaatgtt |
43071974 |
T |
|
| Q |
101 |
gctcagtaaagaaaacaatacctccataaaatgtgcatggtagaagtaaattttaaggtgaattagatataattaaaataagcttaaggtaaaccattag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
43071975 |
gctcagtaaagaaaacaatacctccataaaatgtgcatggtagaagtaaattttaaggtgaattagatataactaaaataagcttaaggtaaaccattag |
43072074 |
T |
|
| Q |
201 |
nnnnnnnntaagcaatctatggtcactcatttgagaataa |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
43072075 |
-aaaaaaataagcaatctatggtcactcatttgagaataa |
43072113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University