View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20728_low_3 (Length: 522)

Name: NF20728_low_3
Description: NF20728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20728_low_3
NF20728_low_3
[»] chr3 (4 HSPs)
chr3 (14-446)||(35497593-35498028)
chr3 (447-505)||(35498149-35498207)
chr3 (91-237)||(29246653-29246811)
chr3 (264-324)||(29246877-29246937)
[»] chr7 (2 HSPs)
chr7 (91-324)||(11210997-11211233)
chr7 (86-197)||(46254001-46254113)
[»] chr6 (1 HSPs)
chr6 (92-131)||(2780810-2780849)
[»] chr1 (2 HSPs)
chr1 (264-324)||(36658352-36658412)
chr1 (99-131)||(36658212-36658244)
[»] chr5 (2 HSPs)
chr5 (264-324)||(32520092-32520152)
chr5 (103-144)||(32521615-32521656)
[»] chr2 (2 HSPs)
chr2 (159-197)||(29717312-29717350)
chr2 (267-324)||(35976011-35976068)
[»] chr4 (1 HSPs)
chr4 (349-390)||(19444434-19444475)


Alignment Details
Target: chr3 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 14 - 446
Target Start/End: Original strand, 35497593 - 35498028
Alignment:
Q  14 tactctgtctccataccctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtacca--gtgacaacaaaa-aatataacaattaaca 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||    
T  35497593 tactctgtctccataccctgtgtgcatttaagtgacatacctgtgcctattccatgtactttagtaccaaagtgacaacaaaaaaatataacaattaaca 35497692  T
Q  111 aataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacgacaacaacaaaaatggatgcaaagaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  35497693 aataatttagagatgattcaatagtttgtatttagaacaatatatattcatagttgactaacgataaaaacacgacaacaataaaaatagatgcaaagaa 35497792  T
Q  211 gaagagatgtccatcggtaacttatgaaaaggaagtagcaataatgattgttcaggtttaaataatagtaaagaagtttatatttaatcaactttaatgg 310  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35497793 gaagagatgtcgatcggtaacttatgaaaaggaagtagcaattatgattgttcaggtttaaataatagtaaagaagtttatatttaatcaactttaatgg 35497892  T
Q  311 tatataaatttaaaatcatataagattggctgtaccgacactcatatccattcaaatatatgggtaattatccgtgcccaaactcagaatcataaatgca 410  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| ||||||||||  | |||||||||||    
T  35497893 tatataaatttaaaatcatataagattggccgtaccgacactcatacccattcaaatatatgggtaattatccgagcccaaactcgaactcataaatgca 35497992  T
Q  411 tgtgtttatcctgctcatcattgtgaatattcttgg 446  Q
    |||||||||||||| |||||| ||||||||| ||||    
T  35497993 tgtgtttatcctgcccatcatcgtgaatatttttgg 35498028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 447 - 505
Target Start/End: Original strand, 35498149 - 35498207
Alignment:
Q  447 gcctcctttttagccgtatgcgaaagaaaatatttgctaggcgaattcagttcgctagc 505  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  35498149 gcctcctttttagccgtatgtgaaagaaaatatttgctaggcgaattcagttcgttagc 35498207  T

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Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 91 - 237
Target Start/End: Original strand, 29246653 - 29246811
Alignment:
Q  91 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttag-aacaatatgtatt-------catagttgactaacgataaaaaca 182  Q
    ||||||| |||||  |||||||||||||||||||||||||| | || |||||| | ||| ||||||||        ||||||||||||||||||||||||    
T  29246653 aaaaaatgtaacatataacaaataatttagagatgattcaacaattcgtattttggaaccatatgtatgatgtatccatagttgactaacgataaaaaca 29246752  T
Q  183 cgacaacaaca-aaaatggatgc---aaagaagaagagatgtccatcggtaacttatga 237  Q
     |||||||||| |||||||||||   |||||| |||||||||| ||| ||| |||||||    
T  29246753 agacaacaacagaaaatggatgcacaaaagaacaagagatgtcgatcagtagcttatga 29246811  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 29246877 - 29246937
Alignment:
Q  264 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 324  Q
    ||||||||||||| ||||| |||||||   ||||| |||||||||| |||||| |||||||    
T  29246877 aggtttaaataattgtaaaaaagtttacgattaattaactttaatgatatatacatttaaa 29246937  T

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Target: chr7 (Bit Score: 64; Significance: 9e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 91 - 324
Target Start/End: Complemental strand, 11211233 - 11210997
Alignment:
Q  91 aaaaaatataacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacgacaaca 190  Q
    ||||||| ||||||||||||||||||||||||||||||||| | ||| |||||  ||| | |  ||| |||||||||||||||||||||| |  ||||||    
T  11211233 aaaaaatgtaacaattaacaaataatttagagatgattcaacaatttctatttgaaaccaca--tatccatagttgactaacgataaaaataaaacaaca 11211136  T
Q  191 acaaaaatggatgcaaagaagaagagatgtccatcggtaa-cttatgaaaaggaagtagcaataatgattgttcagg------tttaaataatagtaaag 283  Q
       |||||||||||| | ||||||||||||| |||||||| | || || || |||| | ||| || ||||||| |||      ||||||||||| ||||     
T  11211135 --gaaaatggatgcacaaaagaagagatgtcgatcggtaagcataagagaaagaagcaacaacaacgattgtttaggtttagatttaaataataataaaa 11211038  T
Q  284 aagtttatatttaatcaactttaatggtatataaatttaaa 324  Q
    | ||||| | ||||||| |||||||||||||||||||||||    
T  11211037 atgtttacaattaatcatctttaatggtatataaatttaaa 11210997  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 46254113 - 46254001
Alignment:
Q  86 acaacaaaaaata-taacaattaacaaataatttagagatgattcaatagtttgtatttagaacaatatgtattcatagttgactaacgataaaaacacg 184  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||| | |||||||||  ||| |||||| | ||||||||||||| |||||||| | |    
T  46254113 acaacaaaaaaaagtaacaattaacaaataatttagagatgattcaacaatttgtatttgaaaccatatgtctccatagttgactaatgataaaaataag 46254014  T
Q  185 acaacaacaaaaa 197  Q
    |||| ||||||||    
T  46254013 acaagaacaaaaa 46254001  T

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Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 131
Target Start/End: Original strand, 2780810 - 2780849
Alignment:
Q  92 aaaaatataacaattaacaaataatttagagatgattcaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  2780810 aaaaatataacaattaacaaataatttagagatgattcaa 2780849  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 264 - 324
Target Start/End: Original strand, 36658352 - 36658412
Alignment:
Q  264 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 324  Q
    ||||||||||||||||||| | ||||| | |||||||||||||||| ||||||||| ||||    
T  36658352 aggtttaaataatagtaaaaatgtttacacttaatcaactttaatgatatataaatataaa 36658412  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 36658212 - 36658244
Alignment:
Q  99 taacaattaacaaataatttagagatgattcaa 131  Q
    ||||||||||||||||||||| |||||||||||    
T  36658212 taacaattaacaaataatttaaagatgattcaa 36658244  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 264 - 324
Target Start/End: Complemental strand, 32520152 - 32520092
Alignment:
Q  264 aggtttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 324  Q
    |||||||||||||  |||| ||||||| | |||||||||||||||||||| || |||||||    
T  32520152 aggtttaaataattataaaaaagtttacaattaatcaactttaatggtatgtagatttaaa 32520092  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 32521656 - 32521615
Alignment:
Q  103 aattaacaaataatttagagatgattcaatagtttgtattta 144  Q
    ||||||||||||||||||||||||||||| | ||| ||||||    
T  32521656 aattaacaaataatttagagatgattcaacaatttttattta 32521615  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 197
Target Start/End: Complemental strand, 29717350 - 29717312
Alignment:
Q  159 catagttgactaacgataaaaacacgacaacaacaaaaa 197  Q
    |||||||||||||||||||||||| |||||||| |||||    
T  29717350 catagttgactaacgataaaaacaagacaacaagaaaaa 29717312  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 324
Target Start/End: Complemental strand, 35976068 - 35976011
Alignment:
Q  267 tttaaataatagtaaagaagtttatatttaatcaactttaatggtatataaatttaaa 324  Q
    |||||||| | ||||| ||||||| | |||||  ||||||||||||||||||||||||    
T  35976068 tttaaatatttgtaaaaaagtttacaattaattgactttaatggtatataaatttaaa 35976011  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 349 - 390
Target Start/End: Complemental strand, 19444475 - 19444434
Alignment:
Q  349 cactcatatccattcaaatatatgggtaattatccgtgccca 390  Q
    |||||||| |||||||||| | ||||||||||||||||||||    
T  19444475 cactcatacccattcaaatttgtgggtaattatccgtgccca 19444434  T

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