View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20729_high_1 (Length: 532)
Name: NF20729_high_1
Description: NF20729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20729_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 34 - 471
Target Start/End: Original strand, 2039199 - 2039635
Alignment:
| Q |
34 |
tggtgtaatcaataaccttttgaaagtgcacaataggtagtgnnnnnnnnnnnnctaacaaggcaagtttacttacaatagtcacattgagggattctat |
133 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2039199 |
tggtgtaatcaataaccttttgaaagtgcacaataggtagtgttttttgtttttctaacaaggcaagtttacttacaatagtcacattgagggattctat |
2039298 |
T |
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| Q |
134 |
ttagttgatcataacaaagattaaaggacatttgtcagacaagaaaacttgttgtctagacaaagttttcgacnnnnnnntgctcctaagcttaataggc |
233 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2039299 |
ttagctgatcataacaaagattaaaggacatttgtcagacaagaaaacttgttgtctagacaaagttttcgacaaaaaaatgctcctaagcttaataggt |
2039398 |
T |
|
| Q |
234 |
acacaatccacaatgtcctatttcattacggttggcaatgttttggattcgagtgtgagtaattacattaaaattattatataaatgagttaaacgttag |
333 |
Q |
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| T |
2039399 |
acacaatccacaatgtcctatttcattacggttggcaatgttttggattcgagtgtgagtaattacattaaaattattatataaatgagttaaac-ttgg |
2039497 |
T |
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| Q |
334 |
atatataagagagcataaattatacatccaaaattttgcttggagatgtgatccatcgatcttttggtaatctttgattattagttcatcgttgctccca |
433 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |
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| T |
2039498 |
atatataagagagcataaattatatatccaaaattttgcttggagatgtgatccatcgatcttttggtaatctttgattattagttcattgttgcttcca |
2039597 |
T |
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| Q |
434 |
taacttccgcaagattttttaacaagtgatattagagc |
471 |
Q |
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|||||||| | ||||||||||||||||||||| ||||| |
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| T |
2039598 |
taacttccacgagattttttaacaagtgatatcagagc |
2039635 |
T |
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