View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20729_high_12 (Length: 308)
Name: NF20729_high_12
Description: NF20729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20729_high_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 22 - 299
Target Start/End: Complemental strand, 5896605 - 5896332
Alignment:
| Q |
22 |
catcatcacaaggggctgctgaagctgtgaagaatgcaactggaattaacaaaaagtgatccaattaagcagaagggatcctagtaattaatccagtttt |
121 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
5896605 |
catcagcacaaggggctgctgaagctgtgaagaatgcaactggaattaacaaaaagtgatccaattaagcagaagggatcctagtcat----ccagtttt |
5896510 |
T |
|
| Q |
122 |
actcggttttattttcttcttctagggcattatgtataaaaaagtgctctaatttgtgtttgtaattttgttttgctcccaattagatatcttgtgaata |
221 |
Q |
| |
|
|||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896509 |
actcagttttttttctttcttctagggcattatgtataaaaaagtgctctaatttgtgtttgtaattttgttttgctcccaattagatatcttgtgaata |
5896410 |
T |
|
| Q |
222 |
actctttgtttcaacgagagaactaggatgtagttctcggttaattcattaatcaatgaaatttatattagaataatc |
299 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5896409 |
actctttgtttcaacaagagaactaggatgtagttctcggttaattcattaatcaatgaaatttatattagaataatc |
5896332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University