View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20729_high_14 (Length: 301)
Name: NF20729_high_14
Description: NF20729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20729_high_14 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 10 - 286
Target Start/End: Complemental strand, 1232036 - 1231760
Alignment:
| Q |
10 |
ccacagatgtcgcataccttcacctatttttcaatcaccacagttaaaaatatgaattgaggttaagcatctccacatatgccattacattacactcctt |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
1232036 |
ccacagatgtcgcataccttcacctatttttcaatcaccacagttagaaatatgaattgaggttaagcatctccacatatgccgttacattacactcctt |
1231937 |
T |
|
| Q |
110 |
ccattttcatctcaatcaagtttaatttcagccgaagaagatcaacataaaggaaaggaaaggaaagatactcacatcatgttccacaacatctgattca |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1231936 |
ccattttcatctcaatcaagtttaatttcagccgaagaagatcaacataaatgaaaggaaaggaaagatactcacatcatgttccacaacatctgattca |
1231837 |
T |
|
| Q |
210 |
tcactctcattttcagattgagattcctgctttctaggtgatttaaccagctcttcagctttctgatgatgtccatc |
286 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
1231836 |
tcactctcattttcagattgagattcctgctttctaggtgatttaaccagctcttcagctttctcatgatgtccatc |
1231760 |
T |
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