View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20729_high_2 (Length: 476)
Name: NF20729_high_2
Description: NF20729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20729_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 16 - 447
Target Start/End: Original strand, 34899548 - 34899975
Alignment:
| Q |
16 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaattagtggg |
115 |
Q |
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| T |
34899548 |
acttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaacctcaactagtggg |
34899647 |
T |
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| Q |
116 |
tcagttgacatgttccacttggtttttatgcgtgagcagcaccacagaagcatatgcaaatgttataatagggataggcaagagataccaaattatcata |
215 |
Q |
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| T |
34899648 |
tcagttgacatgttccacttggtttttatgcgtaagta---ccacacaagcatatgcaaatgttataataag-ataggcaagagataccaaattatcata |
34899743 |
T |
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| Q |
216 |
ttgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaagggaaattttgagacta |
315 |
Q |
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| T |
34899744 |
ttgtcagtgatatcatctgcacaaattcacataaaattttgtagttggaagatacatacctttcatgtttggtgagaatggaaggaaaattttgagacta |
34899843 |
T |
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| Q |
316 |
taaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggta |
415 |
Q |
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| T |
34899844 |
taaggttgcatacacgcaggggaagacacaatttagcttttgttgacatcaaatagcgagagaagaactaaagagagatgtgtttatatgcatataggta |
34899943 |
T |
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| Q |
416 |
aagtttggtagtttcaactttcaagttgagat |
447 |
Q |
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| T |
34899944 |
aagtttggtagtttcaactttcaagttgagat |
34899975 |
T |
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