View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2072_high_1 (Length: 254)

Name: NF2072_high_1
Description: NF2072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2072_high_1
NF2072_high_1
[»] chr8 (9 HSPs)
chr8 (77-249)||(26981035-26981207)
chr8 (77-250)||(26083903-26084079)
chr8 (112-249)||(5334308-5334445)
chr8 (75-134)||(42932714-42932773)
chr8 (77-146)||(42315342-42315412)
chr8 (77-146)||(23828343-23828413)
chr8 (77-146)||(45244285-45244355)
chr8 (77-110)||(7496758-7496791)
chr8 (133-250)||(42934922-42935039)
[»] chr7 (6 HSPs)
chr7 (75-234)||(20077255-20077414)
chr7 (76-195)||(4407778-4407895)
chr7 (84-225)||(30061499-30061640)
chr7 (75-144)||(39742297-39742366)
chr7 (75-132)||(11072196-11072253)
chr7 (75-147)||(48850724-48850795)
[»] chr6 (8 HSPs)
chr6 (77-216)||(31442517-31442655)
chr6 (77-247)||(7867848-7868018)
chr6 (76-247)||(21762021-21762192)
chr6 (74-164)||(20915980-20916070)
chr6 (71-190)||(826689-826808)
chr6 (80-215)||(30836413-30836548)
chr6 (77-146)||(31665629-31665699)
chr6 (79-146)||(15296147-15296215)
[»] chr3 (15 HSPs)
chr3 (91-236)||(11582588-11582733)
chr3 (77-246)||(1529165-1529335)
chr3 (72-226)||(52041305-52041459)
chr3 (77-226)||(42655773-42655922)
chr3 (77-230)||(39484726-39484879)
chr3 (86-159)||(2241442-2241515)
chr3 (77-213)||(1141744-1141880)
chr3 (110-247)||(45069925-45070061)
chr3 (76-236)||(22424281-22424441)
chr3 (183-250)||(2241373-2241440)
chr3 (77-147)||(15291461-15291530)
chr3 (80-129)||(2241514-2241563)
chr3 (77-124)||(49235500-49235547)
chr3 (77-134)||(15996392-15996449)
chr3 (70-110)||(48910166-48910206)
[»] chr2 (10 HSPs)
chr2 (76-225)||(38996442-38996591)
chr2 (77-223)||(32281486-32281632)
chr2 (75-164)||(28125534-28125623)
chr2 (18-78)||(3406292-3406352)
chr2 (77-249)||(29280085-29280257)
chr2 (77-149)||(22625385-22625457)
chr2 (76-224)||(38955763-38955911)
chr2 (80-145)||(21922337-21922402)
chr2 (77-147)||(6667463-6667532)
chr2 (77-110)||(28926075-28926108)
[»] chr5 (6 HSPs)
chr5 (75-201)||(6697933-6698059)
chr5 (77-247)||(19557813-19557982)
chr5 (114-250)||(9045160-9045296)
chr5 (76-146)||(37337322-37337393)
chr5 (75-212)||(31981791-31981927)
chr5 (77-146)||(26110688-26110758)
[»] chr4 (9 HSPs)
chr4 (76-213)||(27067873-27068010)
chr4 (80-246)||(9451245-9451411)
chr4 (77-195)||(10427600-10427717)
chr4 (77-192)||(9199750-9199865)
chr4 (77-139)||(9199512-9199574)
chr4 (76-146)||(12094856-12094926)
chr4 (76-225)||(24257702-24257852)
chr4 (120-192)||(9201332-9201404)
chr4 (77-139)||(6898760-6898822)
[»] chr1 (2 HSPs)
chr1 (76-223)||(15700720-15700867)
chr1 (77-223)||(22964007-22964153)


Alignment Details
Target: chr8 (Bit Score: 105; Significance: 2e-52; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 26981035 - 26981207
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    |||||||||||||||||||||||| |||||| || ||||||||||||||||||||||||||||||||||||||| || ||||| |||| |||| ||||||    
T  26981035 atctttcttactaaagcttgtttgatcaagcaatatcataccctaattttaacctaatatttttcctccatcatccaagcattaaattctccttagtgtt 26981134  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 249  Q
    ||||||||||||| || || ||||||| ||||||||| ||||||||||||| || ||||| || |||||||||    
T  26981135 tttcctaatcatcgctataggttcaaaatctaaatttccctcccacaacaaatgtagtctgccaatgcatgta 26981207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 250
Target Start/End: Original strand, 26083903 - 26084079
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||  | ||||| |||| | || |||| |    
T  26083903 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcatcaaagcattaaattcttcttagtgct 26084002  T
Q  177 tttccta---atcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 250  Q
    |||||||   |||||||||||| ||||||| || |||||| |||| |||| || ||  ||||| || ||||||||||    
T  26084003 tttcctaatcatcatcactctaggttcaaaatccaaatttccctctcacaccacttttagtctgccgatgcatgtac 26084079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 112 - 249
Target Start/End: Original strand, 5334308 - 5334445
Alignment:
Q  112 tcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaat 211  Q
    |||||||||||||||||||||| ||||| |||||||||| || ||||| |||| || | | || ||||||||||||||||| || ||| ||| |||||||    
T  5334308 tcataccctaattttaacctaagattttccctccatcatccaagcattaaattctctttaatgcttttcctaatcatcactataggttgaaaatctaaat 5334407  T
Q  212 tttcctcccacaacaattggagtcttcctatgcatgta 249  Q
    || ||||||||||||| || ||||| || |||||||||    
T  5334408 ttccctcccacaacaaatgtagtctgccgatgcatgta 5334445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 134
Target Start/End: Original strand, 42932714 - 42932773
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 134  Q
    ||||||||||||||||||||||| || |||||| || ||||| |||||||||||||||||    
T  42932714 aaatctttcttactaaagcttgtctgatcaagcaatatcatatcctaattttaacctaat 42932773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 42315342 - 42315412
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 146  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  42315342 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 42315412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 23828343 - 23828413
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 146  Q
    ||||||||||||| ||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  23828343 atctttcttactagagcttgtttggtcaagctattagtaaccctaatttttaacctaatattttccctcca 23828413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 45244355 - 45244285
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 146  Q
    |||||||||||||||| |||| ||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  45244355 atctttcttactaaagtttgtctggtcaagctattagtaaccctaattcttaacctaatattttccctcca 45244285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 7496758 - 7496791
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctat 110  Q
    |||||||||||||||||||||||| |||||||||    
T  7496758 atctttcttactaaagcttgtttgatcaagctat 7496791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 133 - 250
Target Start/End: Original strand, 42934922 - 42935039
Alignment:
Q  133 atatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattgga 232  Q
    ||||||| ||||||||||  |  |||| |||| |||| | || ||||||||||||||||  || ||||||| || ||||||||||| |||| || ||  |    
T  42934922 atattttccctccatcatcaaaacattaaattctccttaatgcttttcctaatcatcaccttaggttcaaaatccaaattttcctctcacaccactttta 42935021  T
Q  233 gtcttcctatgcatgtac 250  Q
    |||| || ||||||||||    
T  42935022 gtctgccgatgcatgtac 42935039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 4e-47; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 75 - 234
Target Start/End: Complemental strand, 20077414 - 20077255
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 174  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||| || ||||| ||||  ||| ||||    
T  20077414 aaatctttcttactaaagcttgtttggtcaagcaatatcataccctaattttaacctaatattttccctccatcatccaagcattaaattcaccttagtg 20077315  T
Q  175 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagt 234  Q
     ||||||||||||||||| || |||||||||||||||||  |||||| ||||||| ||||    
T  20077314 cttttcctaatcatcactttaggttcaaattctaaatttcgctcccataacaattagagt 20077255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 195
Target Start/End: Original strand, 4407778 - 4407895
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    ||||||||||||||||||  || ||||||||| || |||||||||||||||||||||||||||| |||||||||  ||  |||| |||| |||| |||||    
T  4407778 aatctttcttactaaagc--gtctggtcaagcaatatcataccctaattttaacctaatattttccctccatcacccaaacattaaattctccttagtgt 4407875  T
Q  176 ttttcctaatcatcactcta 195  Q
    |||||||||||||| |||||    
T  4407876 ttttcctaatcatcgctcta 4407895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 84 - 225
Target Start/End: Original strand, 30061499 - 30061640
Alignment:
Q  84 ttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttccta 183  Q
    |||||||||||||| || |||||||||||||||||||||||| | ||||||||||| |||||||  |||| | |||||||| | |  |||| || |||||    
T  30061499 ttactaaagcttgtctgatcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagtatttaattcttcaaagtgcttatccta 30061598  T
Q  184 atcatcactctaagttcaaattctaaattttcctcccacaac 225  Q
    |||||||||||||  | |||||| || ||| |||||||||||    
T  30061599 atcatcactctaatcttaaattcaaattttccctcccacaac 30061640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 75 - 144
Target Start/End: Complemental strand, 39742366 - 39742297
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctc 144  Q
    |||||||||||||||||||||||||| ||||||||| | || |||||||| ||||||||||||||| ||||    
T  39742366 aaatctttcttactaaagcttgtttgatcaagctat-tgataaccctaatcttaacctaatattttccctc 39742297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 75 - 132
Target Start/End: Complemental strand, 11072253 - 11072196
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaaccta 132  Q
    ||||||||||| |||||||||||  |||||||| ||| |  |||||||||||||||||    
T  11072253 aaatctttctttctaaagcttgtccggtcaagcaatccctaaccctaattttaaccta 11072196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 48850724 - 48850795
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 147  Q
    ||||||||||| ||||||||||| || |||||||||    ||||||||| |||||||||| |||| |||||||    
T  48850724 aaatctttctttctaaagcttgtctgatcaagctattgtttaccctaatcttaacctaat-ttttccctccat 48850795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 77 - 216
Target Start/End: Original strand, 31442517 - 31442655
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||| || ||||| |||| |||| |||| |    
T  31442517 atctttcttactaaagcttgtttggtcaagcaatcacataccctaattttaacctaatattttccctccatcatccaagcattaaattctcctaagtgct 31442616  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcc 216  Q
    |||||||||||||||||||||||||||||| |||||||||    
T  31442617 tttcctaatcatcactctaagttcaaattc-aaattttcc 31442655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 7868018 - 7867848
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||| | ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| |    
T  7868018 atctttcttactaaagcttatctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgct 7867919  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 247  Q
    | || |||| ||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  7867918 tatcttaatgatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 7867848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 76 - 247
Target Start/End: Original strand, 21762021 - 21762192
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    |||||||||||||||| ||||| || |||||||||  |  ||||||||||||||||| |||||| |||||||||  ||   ||||||||||| | ||||     
T  21762021 aatctttcttactaaaacttgtctgatcaagctattgctcaccctaattttaacctactattttccctccatcacccaattatttaattttcgttagtgc 21762120  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 247  Q
    |||||||| ||||||  |||||||||| || ||||||| |||||||||||| ||| | ||| || |||||||    
T  21762121 ttttcctactcatcaagctaagttcaatttttaaatttccctcccacaacatttgcattctgccgatgcatg 21762192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 164
Target Start/End: Complemental strand, 20916070 - 20915980
Alignment:
Q  74 caaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 164  Q
    |||||||||||||||||||||||| || |||||| || | ||||| |||||||||||||||||||| |||||||||| || ||||| ||||    
T  20916070 caaatctttcttactaaagcttgtctgatcaagcaatatgataccttaattttaacctaatattttccctccatcatccaagcattaaatt 20915980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 71 - 190
Target Start/End: Complemental strand, 826808 - 826689
Alignment:
Q  71 aaacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctc 170  Q
    ||||| ||||||||||||||| ||||| ||||||||||||     ||| |||||||||||||||||||| ||||||||   ||  |||||||||||| |     
T  826808 aaacacatctttcttactaaaacttgtctggtcaagctattgttcaccttaattttaacctaatattttccctccatcgcccaatcatttaattttcgtt 826709  T
Q  171 agtgtttttcctaatcatca 190  Q
    |||| |||||||| ||||||    
T  826708 agtgcttttcctactcatca 826689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 215
Target Start/End: Complemental strand, 30836548 - 30836413
Alignment:
Q  80 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 179  Q
    |||||||||||||||||| || |||||| ||     ||||||||||||| |||||||||| ||||||||   || ||||||||||||| | |||| |||     
T  30836548 tttcttactaaagcttgtctgatcaagcaattgttcaccctaattttaatctaatattttccctccatcccccaagcatttaattttcatgagtgctttc 30836449  T
Q  180 cctaatcatcactctaagttcaaattctaaattttc 215  Q
    |||| ||| ||  |||||||||| || |||||||||    
T  30836448 cctactcagcaagctaagttcaatttttaaattttc 30836413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 146
Target Start/End: Complemental strand, 31665699 - 31665629
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctcca 146  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| ||||||||||||||| ||||||    
T  31665699 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaatattttccctcca 31665629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 79 - 146
Target Start/End: Original strand, 15296147 - 15296215
Alignment:
Q  79 ctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 146  Q
    ||||||||||||||||||||| ||||||||||     ||||||| ||||||||||||||||| ||||||    
T  15296147 ctttcttactaaagcttgttttgtcaagctataagtaaccctaatttttaacctaatattttccctcca 15296215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 5e-34; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 91 - 236
Target Start/End: Original strand, 11582588 - 11582733
Alignment:
Q  91 agcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatca 190  Q
    ||||||| ||||||||| || |||||||||||||||||||||||||||| ||||| |||| ||  |||| |||| | || ||||||||||||||| ||||    
T  11582588 agcttgtctggtcaagcaatatcataccctaattttaacctaatattttccctccgtcatccaaacattaaattcttcttagtgtttttcctaataatca 11582687  T
Q  191 ctctaagttcaaattctaaattttcctcccacaacaattggagtct 236  Q
    ||||| ||||||||  |||||||||||||||||||| ||| |||||    
T  11582688 ctctaggttcaaatcttaaattttcctcccacaacagttgtagtct 11582733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 77 - 246
Target Start/End: Original strand, 1529165 - 1529335
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt-ttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    ||||||||||||||||||||||||||||||||||     ||||||||| |||||||||| |||| ||||||||||||| ||| |||||| || | | |||    
T  1529165 atctttcttactaaagcttgtttggtcaagctattagtaaccctaattcttaacctaattttttccctccatcatacaagcaattaattctcgttaatgt 1529264  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcat 246  Q
    |||||||| ||||||  ||||||||||||| ||||||| |||||||||| || | |||||| || ||||||    
T  1529265 ttttcctactcatcaaactaagttcaaattttaaatttccctcccacaaaaaattgagtctgccgatgcat 1529335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 72 - 226
Target Start/End: Complemental strand, 52041459 - 52041305
Alignment:
Q  72 aacaaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctca 171  Q
    |||| ||||||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| | |||||||  || ||||||||||||  | |    
T  52041459 aacatatctttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccttccatcacccaagcatttaattttggtta 52041360  T
Q  172 gtgtttttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 226  Q
    ||| |||||||| ||||||  |||||||||| || ||||||| ||||| ||||||    
T  52041359 gtgcttttcctactcatcaagctaagttcaatttttaaatttccctcctacaaca 52041305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 77 - 226
Target Start/End: Original strand, 42655773 - 42655922
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||| ||||||||| ||||||||||||     |||||||||||||| ||||||||| ||| |||||  || ||||||||||||  | ||||||    
T  42655773 atctttcttaccaaagcttgtctggtcaagctattgttcaccctaattttaacataatattttcccttcatcacccaagcatttaattttgattagtgtt 42655872  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaaca 226  Q
    ||||||| ||||||  |||||||||| || ||||||| ||||||| ||||    
T  42655873 tttcctactcatcaagctaagttcaatttttaaatttccctcccataaca 42655922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 77 - 230
Target Start/End: Complemental strand, 39484879 - 39484726
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcat-accctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    |||||||||||||||||||||||||||||||||| |  | |||||| ||||||||||||||||| |||||||||  ||  |||||||||||  | | ||     
T  39484879 atctttcttactaaagcttgtttggtcaagctatatgttcaccctagttttaacctaatattttccctccatcacccaaacatttaattttaattaatgc 39484780  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattg 230  Q
    |||||||| |||||  ||||||||||| || |||| || ||| ||||||||||||    
T  39484779 ttttcctactcatctttctaagttcaatttttaaa-ttccctgccacaacaattg 39484726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 159
Target Start/End: Complemental strand, 2241515 - 2241442
Alignment:
Q  86 actaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatt 159  Q
    |||||||||||||| ||||||| |||||||||| ||||||||||||||||||||||||| |||||||| |||||    
T  2241515 actaaagcttgtttcgtcaagcaatctcataccttaattttaacctaatatttttcctctatcatacaagcatt 2241442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 1141744 - 1141880
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||||||||||||||| ||     || |||||||||| |||||||||| ||||||||   || ||||||||||||| | ||||||    
T  1141744 atctttcttactaaagcttgtttggtcaagcaattgttcactctaattttaatctaatattttccctccatcccccaagcatttaattttcattagtgtt 1141843  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattt 213  Q
    ||||||| ||| ||  || ||||||| || |||||||    
T  1141844 tttcctactcaacaagctgagttcaatttttaaattt 1141880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 45069925 - 45070061
Alignment:
Q  110 tctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaa 209  Q
    |||| ||||||||||| | ||||||||||| |||||||  |||| |||||||||||| || |||| || |||||||||||||   ||  |||||||| ||    
T  45069925 tctcctaccctaatttaaccctaatattttccctccattgtacaagcatttaatttttctaagtgcttatcctaatcatcacataaatctcaaattc-aa 45070023  T
Q  210 attttcctcccacaacaattggagtcttcctatgcatg 247  Q
    |||||||||||| |||  ||| ||||| || |||||||    
T  45070024 attttcctcccataactcttgaagtctgccgatgcatg 45070061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 22424441 - 22424281
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    ||||||||||||||||| || | ||||||||||||     |||||||||||||||||||||||| |||||||||   |  |||||||||||  | |||      
T  22424441 aatctttcttactaaagtttatctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacctaaacatttaatttttgttagtac 22424342  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtct 236  Q
    |||||||| |||| |  ||||||| || || | ||||| |||||||||||  |||||||||    
T  22424341 ttttcctactcattaagctaagttgaatttttgaatttccctcccacaacctttggagtct 22424281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 2241440 - 2241373
Alignment:
Q  183 aatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgtac 250  Q
    |||||||||||||| |||||| ||||||||| |||||||||||||||| | ||| || ||||||||||    
T  2241440 aatcatcactctaaattcaaaatctaaatttccctcccacaacaattgcactctgccgatgcatgtac 2241373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 15291461 - 15291530
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 147  Q
    ||||||||||||||||||||||||||||||||||    ||||||||| |||||||||| |||| |||||||    
T  15291461 atctttcttactaaagcttgtttggtcaagctattgtttaccctaatcttaacctaat-ttttccctccat 15291530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 2241563 - 2241514
Alignment:
Q  80 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaac 129  Q
    |||||||||||||||||||| ||||||| || ||||||| ||||||||||    
T  2241563 tttcttactaaagcttgtttcgtcaagcaatttcataccttaattttaac 2241514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 49235547 - 49235500
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaatt 124  Q
    |||||||||||||||| ||||||||||||||||||   ||||||||||    
T  49235547 atctttcttactaaagtttgtttggtcaagctatcatttaccctaatt 49235500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 134
Target Start/End: Complemental strand, 15996449 - 15996392
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaat 134  Q
    ||||||||||||||||||||| || |||||||||    |||||||||| |||||||||    
T  15996449 atctttcttactaaagcttgtctgatcaagctattgtttaccctaattctaacctaat 15996392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 48910206 - 48910166
Alignment:
Q  70 gaaacaaatctttcttactaaagcttgtttggtcaagctat 110  Q
    |||| ||||||||||||||| |||||||||| |||||||||    
T  48910206 gaaaaaaatctttcttactagagcttgtttgatcaagctat 48910166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 5e-34; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 76 - 225
Target Start/End: Complemental strand, 38996591 - 38996442
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    |||||||||||||||||||||| || ||||||||| |  ||||||||||||||||||||||||| ||||||||| |||  ||||||||| | || |||||    
T  38996591 aatctttcttactaaagcttgtctgatcaagctatatgttaccctaattttaacctaatattttccctccatcaaacaaacatttaattctgcttagtgt 38996492  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccacaac 225  Q
    |||||||| ||||||   |||||||||||| ||||||| ||||| |||||    
T  38996491 ttttcctactcatcaagttaagttcaaattttaaatttccctcctacaac 38996442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 32281486 - 32281632
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    |||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  |||| |    
T  32281486 atctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgct 32281585  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 223  Q
    | |||||||||||||||||| || |||||| |||||| |||||||||    
T  32281586 tatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 32281632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 75 - 164
Target Start/End: Original strand, 28125534 - 28125623
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaatt 164  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||| |||||||  |||| ||||||||||    
T  28125534 aaatctttcttactaaagcttgtctggtcaagctatctcataccctaatttaaccctaatattttccctccattgtacaagcatttaatt 28125623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 3406292 - 3406352
Alignment:
Q  18 atatatgaagctttaaaatgtagcttatacttggacgtgaataataaatgtggaaacaaat 78  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3406292 atatatgaagctttaaaatgtagcttatacttggacgtgaataataaatgtggaaacaaat 3406352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 77 - 249
Target Start/End: Original strand, 29280085 - 29280257
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||| ||||| || | |||||||     |||||||||||||||||||||||| |||| ||||   | |||| |||||||| | |||| |    
T  29280085 atctttcttactaaaacttgtctgatgaagctattgttcaccctaattttaacctaatattttccctcaatcacctaagcatgtaattttcgttagtgct 29280184  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatgta 249  Q
    |||| || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || |||||||||    
T  29280185 tttcgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcatgta 29280257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 22625457 - 22625385
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatca 149  Q
    ||||||||||||||| ||||| ||||||||| ||   |||||||||||||||||||||||||| |||||||||    
T  22625457 atctttcttactaaaacttgtctggtcaagcaattggataccctaattttaacctaatattttccctccatca 22625385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 224
Target Start/End: Complemental strand, 38955911 - 38955763
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcata-ccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 174  Q
    |||||| ||||||||||||| | || |||| |||| | ||| |||||||| |||||||||||||| |||||||||  || ||||||||||||  | | ||    
T  38955911 aatcttacttactaaagcttatctgatcaaactat-tgataaccctaattctaacctaatattttccctccatcacccaagcatttaatttttgttaatg 38955813  T
Q  175 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaa 224  Q
     |||||||| ||| ||   |||| ||||| ||||||||| ||||||||||    
T  38955812 cttttcctactcagcaaggtaagctcaaaatctaaatttccctcccacaa 38955763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 80 - 145
Target Start/End: Original strand, 21922337 - 21922402
Alignment:
Q  80 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcc 145  Q
    |||||| ||||||||||| || |||||||||  | ||||||||| ||||||||||||||| |||||    
T  21922337 tttctttctaaagcttgtctgatcaagctataacttaccctaatcttaacctaatattttccctcc 21922402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 147
Target Start/End: Original strand, 6667463 - 6667532
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccat 147  Q
    ||||||||| ||||||||||||||||||||||||    |||||||||  ||||||||| |||| |||||||    
T  6667463 atctttctttctaaagcttgtttggtcaagctattgtttaccctaatcctaacctaat-ttttccctccat 6667532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 77 - 110
Target Start/End: Original strand, 28926075 - 28926108
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctat 110  Q
    ||||||||||||||||||||| ||||||||||||    
T  28926075 atctttcttactaaagcttgtctggtcaagctat 28926108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 75 - 201
Target Start/End: Original strand, 6697933 - 6698059
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 174  Q
    ||||||||||||||||| ||||| ||||||||| |||||||||| |||||||||||||||||||| |||||||||| || ||||| |||| || | ||||    
T  6697933 aaatctttcttactaaaacttgtctggtcaagcaatctcataccttaattttaacctaatattttccctccatcatgcaagcattaaattctcttgagtg 6698032  T
Q  175 tttttcctaatcatcactctaagttca 201  Q
     ||||| |||||||| |||||||||||    
T  6698033 cttttcataatcatcgctctaagttca 6698059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 247
Target Start/End: Complemental strand, 19557982 - 19557813
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||| | |||| |||||||||||||||||||||| | |||||| ||||| ||||||  |||| |||||||||||| || |||| |    
T  19557982 atctttcttactaaagcttatctggttaagctatctcataccctaatttaaccctaatgttttt-ctccattgtacaagcatttaatttttctaagtgct 19557884  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcatg 247  Q
    | ||||||||||||| | ||  |||||||| || ||| ||||||| |||  ||| ||||| || |||||||    
T  19557883 tatcctaatcatcacacaaatctcaaattcaaattttccctcccataactcttgaagtctgccgatgcatg 19557813  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 114 - 250
Target Start/End: Original strand, 9045160 - 9045296
Alignment:
Q  114 ataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcactctaagttcaaattctaaattt 213  Q
    |||||||||||||||||||||||||| ||||||||||  |  |||| |||| |||| |||| |||||||||||||||||| | ||||||| || ||||||    
T  9045160 ataccctaattttaacctaatattttccctccatcatcaaaacattaaattctccttagtgcttttcctaatcatcactcaaggttcaaaatccaaattt 9045259  T
Q  214 tcctcccacaacaattggagtcttcctatgcatgtac 250  Q
     |||| |||| || ||  ||||| || ||||||||||    
T  9045260 ccctctcacaccacttttagtctgccgatgcatgtac 9045296  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 76 - 146
Target Start/End: Original strand, 37337322 - 37337393
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 146  Q
    |||||||||||||||||||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  37337322 aatctttcttactaaagcttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 37337393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 212
Target Start/End: Original strand, 31981791 - 31981927
Alignment:
Q  75 aaatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtg 174  Q
    |||||||| ||||||||||||||||| |||||| ||     | |||||||||||||||||||||| ||| |||| | || ||||||||||||| | ||||    
T  31981791 aaatcttttttactaaagcttgtttgatcaagcaattgttcaacctaattttaacctaatattttccctacatcct-caagcatttaattttcatgagtg 31981889  T
Q  175 tttttcctaatcatcactctaagttcaaattctaaatt 212  Q
     |||||||| ||| ||  ||||||| || || ||||||    
T  31981890 cttttcctactcagcaagctaagtttaatttttaaatt 31981927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 146
Target Start/End: Original strand, 26110688 - 26110758
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaa-ttttaacctaatatttttcctcca 146  Q
    ||||||||||||||| ||||||||||||||||||     ||||||| ||||||||||||||||| ||||||    
T  26110688 atctttcttactaaaacttgtttggtcaagctataagtaaccctaatttttaacctaatattttccctcca 26110758  T

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Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 76 - 213
Target Start/End: Original strand, 27067873 - 27068010
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    |||||||||||||||||||||||||||||| |||||  ||||||||||||||| |||||||||| |||  |||||| | |||||||||| |||| ||||     
T  27067873 aatctttcttactaaagcttgtttggtcaaactatcctataccctaattttaatctaatattttcccttgatcataaacgcatttaattctccttagtgc 27067972  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattt 213  Q
    |||||||| ||||||  ||||||||||| | |||||||    
T  27067973 ttttcctactcatcaagctaagttcaaaatttaaattt 27068010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 80 - 246
Target Start/End: Original strand, 9451245 - 9451411
Alignment:
Q  80 tttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgttttt 179  Q
    |||||||||||||||||| ||||||||||||     |||||||||||||||||||||||| |||||||||  || ||||||||||||| | |||| ||||    
T  9451245 tttcttactaaagcttgtctggtcaagctattgttcaccctaattttaacctaatattttccctccatcacccaagcatttaattttcgttagtgctttt 9451344  T
Q  180 cctaatcatcactctaagttcaaattctaaattttcctcccacaacaattggagtcttcctatgcat 246  Q
    | || ||||||  |||||||||| || ||||||| |||||||||||   |||||||| || ||||||    
T  9451345 cgtactcatcaagctaagttcaatttttaaatttccctcccacaacctatggagtctgccaatgcat 9451411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 10427717 - 10427600
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    |||||| ||| ||||| |||||||||||||| || |||||||||||||||||||||||| ||| |||||||||| || ||||| |||| | || ||||||    
T  10427717 atcttttttattaaaggttgtttggtcaagcaatatcataccctaattttaacctaata-tttccctccatcatccaagcattaaattcttcttagtgtt 10427619  T
Q  177 tttcctaatcatcactcta 195  Q
    |||||||||||||||||||    
T  10427618 tttcctaatcatcactcta 10427600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 77 - 192
Target Start/End: Original strand, 9199750 - 9199865
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||||||||||||||||||| ||||||||| || ||||| || | | ||||||||||||||| |||||||||| || ||||| |||| |||| |||  |    
T  9199750 atctttcttactaaagcttgtctggtcaagcaatatcatatcccactattaacctaatattttccctccatcatccaagcattaaattctccttagttct 9199849  T
Q  177 tttcctaatcatcact 192  Q
    ||||||||||||||||    
T  9199850 tttcctaatcatcact 9199865  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 139
Target Start/End: Original strand, 9199512 - 9199574
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 139  Q
    ||||||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||    
T  9199512 atctttcttactaaagcttgtctggtcaagcaatatcataccctaattttaacctaatatttt 9199574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 12094926 - 12094856
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctcca 146  Q
    |||||||||||||||||||||||||||||||||||   | |||||||||||||||||||||||| ||||||    
T  12094926 aatctttcttactaaagcttgtttggtcaagctattagaaaccctaattttaacctaatattttccctcca 12094856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 76 - 225
Target Start/End: Original strand, 24257702 - 24257852
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgca-tttaattttcctcagtg 174  Q
    |||||||||||||||||||||||||||||||| ||     ||||||||||||||||||||||||||||||||||   | ||| ||||||| |  |  |||    
T  24257702 aatctttcttactaaagcttgtttggtcaagcaattgttcaccctaattttaacctaatatttttcctccatcacctaagcattttaattgtagttggtg 24257801  T
Q  175 tttttcctaatcatcactctaagttcaaattctaaattttcctcccacaac 225  Q
     |||||||||||||||  |||||||||| || || || | |||||||||||    
T  24257802 cttttcctaatcatcaaactaagttcaatttttatatctccctcccacaac 24257852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 120 - 192
Target Start/End: Original strand, 9201332 - 9201404
Alignment:
Q  120 taattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtttttcctaatcatcact 192  Q
    |||||||||||||||||||| || ||||||| || ||||| |||| |||| |||  |||||||||||||||||    
T  9201332 taattttaacctaatattttcccaccatcatccaagcattaaattctccttagttcttttcctaatcatcact 9201404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 77 - 139
Target Start/End: Complemental strand, 6898822 - 6898760
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttt 139  Q
    |||||||||||||||||||||||| |||||||||     |||||||| |||||||||||||||    
T  6898822 atctttcttactaaagcttgtttgatcaagctattggtaaccctaatcttaacctaatatttt 6898760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 76 - 223
Target Start/End: Original strand, 15700720 - 15700867
Alignment:
Q  76 aatctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgt 175  Q
    ||||||||||||||||| |||||||||||||||||     ||||||||||||||||| |||||| |||||||| |||| ||||| |||| | |  ||||     
T  15700720 aatctttcttactaaagtttgtttggtcaagctattagtaaccctaattttaacctagtattttccctccatcctacaagcattaaattcttccaagtgc 15700819  T
Q  176 ttttcctaatcatcactctaagttcaaattctaaattttcctcccaca 223  Q
    || |||||||||||||||||| || |||||| |||||| |||||||||    
T  15700820 ttatcctaatcatcactctaattttaaattcaaaatttgcctcccaca 15700867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 77 - 223
Target Start/End: Original strand, 22964007 - 22964153
Alignment:
Q  77 atctttcttactaaagcttgtttggtcaagctatctcataccctaattttaacctaatatttttcctccatcatacatgcatttaattttcctcagtgtt 176  Q
    ||||| ||||||||||||||| ||||||||||||     ||||||||| |||||||||||||| |||||||||  || ||||||||||||  | |||| |    
T  22964007 atcttacttactaaagcttgtctggtcaagctattggtaaccctaattctaacctaatattttccctccatcaaccaagcatttaatttttgttagtgct 22964106  T
Q  177 tttcctaatcatcactctaagttcaaattctaaattttcctcccaca 223  Q
    ||||||| ||| ||   |||| ||||| ||||||||| |||||||||    
T  22964107 tttcctactcagcaaggtaagctcaaaatctaaatttccctcccaca 22964153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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