View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2072_low_1 (Length: 490)

Name: NF2072_low_1
Description: NF2072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2072_low_1
NF2072_low_1
[»] chr3 (3 HSPs)
chr3 (217-474)||(51420906-51421163)
chr3 (217-334)||(51421562-51421678)
chr3 (245-311)||(49287770-49287838)
[»] chr1 (2 HSPs)
chr1 (217-474)||(38931874-38932131)
chr1 (217-334)||(38931359-38931475)
[»] chr5 (4 HSPs)
chr5 (83-213)||(38690555-38690685)
chr5 (100-180)||(38703425-38703507)
chr5 (252-300)||(32944404-32944452)
chr5 (240-272)||(38064839-38064871)
[»] chr8 (5 HSPs)
chr8 (217-318)||(13934955-13935056)
chr8 (217-334)||(37562340-37562456)
chr8 (263-342)||(37562938-37563017)
chr8 (400-474)||(37562863-37562937)
chr8 (247-275)||(1487662-1487690)
[»] chr2 (1 HSPs)
chr2 (245-329)||(4386088-4386173)
[»] chr4 (1 HSPs)
chr4 (252-300)||(33370795-33370843)
[»] chr7 (3 HSPs)
chr7 (252-300)||(32548591-32548641)
chr7 (245-297)||(35770357-35770411)
chr7 (240-272)||(8464465-8464497)


Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-119; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 217 - 474
Target Start/End: Original strand, 51420906 - 51421163
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51420906 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 51421005  T
Q  317 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51421006 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 51421105  T
Q  417 tgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattat 474  Q
    || | |||||||||||||| |||| ||||||||  ||||||||||||||||| |||||    
T  51421106 tgatgcaatgtattaatccaaatctaaaacatttctcatggttttgattgtttattat 51421163  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 217 - 334
Target Start/End: Complemental strand, 51421678 - 51421562
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  51421678 aagtcaatttgaaccattaaatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 51421580  T
Q  317 aaacccataaccagcaac 334  Q
     ||||||  |||||||||    
T  51421579 caacccaccaccagcaac 51421562  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 245 - 311
Target Start/End: Original strand, 49287770 - 49287838
Alignment:
Q  245 tcttatcatacactctcaacactatatttt--tgtcactatcttccactaccatctctttcattcatcc 311  Q
    |||||||||||||||||||||| | |||||  |||||||||||||||| |||||| || || |||||||    
T  49287770 tcttatcatacactctcaacaccaaatttttttgtcactatcttccacaaccatcactctccttcatcc 49287838  T

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Target: chr1 (Bit Score: 218; Significance: 1e-119; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 217 - 474
Target Start/End: Complemental strand, 38932131 - 38931874
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932131 aagtcatttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 38932032  T
Q  317 aaacccataaccagcaactaatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 416  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38932031 aaacccataaccagcaactcatcaaaaccaccgtcccaactctttattgttaatttatttaatttcccttgtctctccttcatccttattttattttctt 38931932  T
Q  417 tgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattat 474  Q
    || | |||||||||||||| |||| ||||||||  ||||||||||||||||| |||||    
T  38931931 tgatgcaatgtattaatccaaatctaaaacatttctcatggttttgattgtttattat 38931874  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 38931359 - 38931475
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  38931359 aagtcaatttgaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 38931457  T
Q  317 aaacccataaccagcaac 334  Q
     ||||||  |||||||||    
T  38931458 caacccaccaccagcaac 38931475  T

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Target: chr5 (Bit Score: 115; Significance: 3e-58; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 83 - 213
Target Start/End: Complemental strand, 38690685 - 38690555
Alignment:
Q  83 attagacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgcaacttacc 182  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38690685 attaaacgggattggataagaagaaaataatggtggtgtttggggtattttctcttgttcctctcaagttttttcttatgattttttcgtgtaacttacc 38690586  T
Q  183 tgacctggtcttcgattttatagtcccaatc 213  Q
    |||| | ||||||||||||||||||||||||    
T  38690585 tgacatcgtcttcgattttatagtcccaatc 38690555  T

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Target: chr5; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 100 - 180
Target Start/End: Complemental strand, 38703507 - 38703425
Alignment:
Q  100 aagaagaaaataatggtggtgttt-ggggtattt-tctcttgttcctctcaagttttttcttatgattttttcgtgcaactta 180  Q
    |||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  38703507 aagaagaaaataatggtggtgttttggggtgtttctctcttgttcctctcaagttttttcctatgattttttcgtgtaactta 38703425  T

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Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 32944452 - 32944404
Alignment:
Q  252 atacactctcaacactatatttttgtcactatcttccactaccatctct 300  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  32944452 atacaccctcaacactagattattgtcactatcttccactaccatctct 32944404  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Complemental strand, 38064871 - 38064839
Alignment:
Q  240 tacaatcttatcatacactctcaacactatatt 272  Q
    |||||||||||||||||||| ||||||||||||    
T  38064871 tacaatcttatcatacactcccaacactatatt 38064839  T

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Target: chr8 (Bit Score: 94; Significance: 1e-45; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 13935056 - 13934955
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13935056 aagtcacttttaaccattagatctacaatcttgtcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 13934957  T
Q  317 aa 318  Q
    ||    
T  13934956 aa 13934955  T

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Target: chr8; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 217 - 334
Target Start/End: Original strand, 37562340 - 37562456
Alignment:
Q  217 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctttcattcatcctccac 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||    
T  37562340 aagtcaattttaaccattagatctacaatcttatcatacactctcaacactatatttttgtcactatcttccactaccatctctctccttcatcc-ccac 37562438  T
Q  317 aaacccataaccagcaac 334  Q
     ||||||  |||||||||    
T  37562439 caacccaccaccagcaac 37562456  T

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Target: chr8; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 263 - 342
Target Start/End: Complemental strand, 37563017 - 37562938
Alignment:
Q  263 acactatatttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataaccagcaactaatcaaa 342  Q
    ||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| |||||||| ||| ||||||    
T  37563017 acactatatttttgtcactatcttccgataccatctctttcattcatcctccacaaacccctaaccagcgactcatcaaa 37562938  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 400 - 474
Target Start/End: Complemental strand, 37562937 - 37562863
Alignment:
Q  400 ccttattttattttctttgctacaatgtattaatcccaatccaaaacattgatcatggttttgattgttcattat 474  Q
    ||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||| |||||||||||||||||    
T  37562937 ccttattttattttctttgctgcaatgtattaatcccaatccaaaatattgctcatgattttgattgttcattat 37562863  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 247 - 275
Target Start/End: Original strand, 1487662 - 1487690
Alignment:
Q  247 ttatcatacactctcaacactatattttt 275  Q
    |||||||||||||||||||||||||||||    
T  1487662 ttatcatacactctcaacactatattttt 1487690  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 245 - 329
Target Start/End: Complemental strand, 4386173 - 4386088
Alignment:
Q  245 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatctctttcattcatcctccacaaacccataacca 329  Q
    |||||||||||||||||||||||| |  |||||||||||||||||||| |||||| || || ||||||| |||| ||||||| ||||    
T  4386173 tcttatcatacactctcaacactagaattttttgtcactatcttccacaaccatcactctccttcatcc-ccaccaacccatcacca 4386088  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 33370843 - 33370795
Alignment:
Q  252 atacactctcaacactatatttttgtcactatcttccactaccatctct 300  Q
    |||||| |||||||||| ||| |||||||||||||||||||||||||||    
T  33370843 atacaccctcaacactagattattgtcactatcttccactaccatctct 33370795  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 300
Target Start/End: Complemental strand, 32548641 - 32548591
Alignment:
Q  252 atacactctcaacactatatt--tttgtcactatcttccactaccatctct 300  Q
    |||||| ||||||| ||||||  ||||||||||||||||||||||||||||    
T  32548641 atacaccctcaacattatattattttgtcactatcttccactaccatctct 32548591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 245 - 297
Target Start/End: Original strand, 35770357 - 35770411
Alignment:
Q  245 tcttatcatacactctcaacactata--tttttgtcactatcttccactaccatc 297  Q
    |||||||||||||||||||||| | |  |||||||||||||||||||| ||||||    
T  35770357 tcttatcatacactctcaacaccagaattttttgtcactatcttccacaaccatc 35770411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 240 - 272
Target Start/End: Original strand, 8464465 - 8464497
Alignment:
Q  240 tacaatcttatcatacactctcaacactatatt 272  Q
    |||||||||||||||||||| ||||||||||||    
T  8464465 tacaatcttatcatacactcccaacactatatt 8464497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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