View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2072_low_3 (Length: 252)
Name: NF2072_low_3
Description: NF2072
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2072_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 18 - 180
Target Start/End: Original strand, 53554381 - 53554546
Alignment:
| Q |
18 |
agaggcgcacaacaaagaaaagagagagagnnnnnnn---cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggtt |
114 |
Q |
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| T |
53554381 |
agagtcgcacaacaaagaaaagagagagagaaaaaaaaaacttccccttaatcttcctttcttcaaatcaaaccccagaagcatcttagagccgtagctt |
53554480 |
T |
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| Q |
115 |
gttcaaagttcaaaaccaaaaataaaaacattagtaaaatcaccattgatagcttatgtaaaagaa |
180 |
Q |
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| T |
53554481 |
gttcaaaattcaaaaccaaaaataaaaacattaggaaaatcaccattgatagcttatgtaaaagaa |
53554546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 22997971 - 22997828
Alignment:
| Q |
55 |
cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaaaaccaaaaataaaaacattagtaaaat |
154 |
Q |
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| T |
22997971 |
cttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagtcacaacttgttcaaagtttaaaaccaaaaataaaaatattagtaaaaa |
22997872 |
T |
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| Q |
155 |
caccattgatagcttatgtaaaagaatttaagaaagaagttcttc |
199 |
Q |
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| T |
22997871 |
caccattgatagcttatataaaagaa-ttaacaaagaagttcttc |
22997828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 55 - 199
Target Start/End: Original strand, 23790432 - 23790575
Alignment:
| Q |
55 |
cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaaaaccaaaaataaaaacattagtaaaat |
154 |
Q |
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| T |
23790432 |
cttcccattaatcttcctttatacaaatcaaatcccaaaagcattttaaagtcacaacttgttcaaagtttaaaaccaaaaataaaaatattagtaaaaa |
23790531 |
T |
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| Q |
155 |
caccattgatagcttatgtaaaagaatttaagaaagaagttcttc |
199 |
Q |
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| T |
23790532 |
caccattgatagcttatataaaagaa-ttaacaaagaagttcttc |
23790575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 55 - 199
Target Start/End: Complemental strand, 18144358 - 18144215
Alignment:
| Q |
55 |
cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaaaaccaaaaataaaaacattagtaaaat |
154 |
Q |
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| T |
18144358 |
cttcccattaatcatgctttatacaaatcaaacaccaaaagcatcttaaagtcataacttattcaaagtttgaaaccaaaaataaaaatattagtaaaaa |
18144259 |
T |
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| Q |
155 |
caccattgatagcttatgtaaaagaatttaagaaagaagttcttc |
199 |
Q |
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| T |
18144258 |
caccattgatagctcatataaaagaa-ttaacaaagaagttcttc |
18144215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 19180117 - 19180045
Alignment:
| Q |
55 |
cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaa |
127 |
Q |
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| T |
19180117 |
cttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttcaa |
19180045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 55 - 198
Target Start/End: Complemental strand, 1480313 - 1480171
Alignment:
| Q |
55 |
cttccctttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaaaaccaaaaataaaaacattagtaaaat |
154 |
Q |
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| T |
1480313 |
cttccccttaatcttcttttctacaaaccaatacccagaagcatcttagagtcataacttgttcaaagttcaaaaccaaaaataaaaacattagtaaaaa |
1480214 |
T |
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| Q |
155 |
caccattgatagcttatgtaaaagaatttaagaaagaagttctt |
198 |
Q |
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| T |
1480213 |
taccattgatag-ttatgtcaatgaagctaacaaagaagttctt |
1480171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 43060652 - 43060571
Alignment:
| Q |
62 |
ttaatcttcctttcttcaaatcaaaccccaggagcatcttagagttataggttgttcaaagttcaaaaccaaaaataaaaac |
143 |
Q |
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| T |
43060652 |
ttaatcttcttttctacaaatcaatacacataagcatcttagagtcatagcttgttcaaagttcaaaaccaaaagtaaaaac |
43060571 |
T |
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