View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_103 (Length: 231)

Name: NF20730_high_103
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_103
NF20730_high_103
[»] chr2 (4 HSPs)
chr2 (19-217)||(20592793-20592991)
chr2 (89-179)||(20593124-20593214)
chr2 (88-189)||(19030954-19031053)
chr2 (69-190)||(18173662-18173783)
[»] chr7 (3 HSPs)
chr7 (90-200)||(19706828-19706938)
chr7 (64-196)||(5642807-5642939)
chr7 (64-196)||(5648659-5648791)
[»] chr4 (1 HSPs)
chr4 (48-190)||(21211993-21212134)
[»] scaffold0039 (1 HSPs)
scaffold0039 (74-205)||(32512-32643)
[»] chr8 (1 HSPs)
chr8 (65-185)||(24590760-24590880)


Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 217
Target Start/End: Complemental strand, 20592991 - 20592793
Alignment:
Q  19 gtaagttggttgaaatgatgaaaaaataagttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattat 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20592991 gtaagttggttgaaatgatgaaaaaataagttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattat 20592892  T
Q  119 cagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttccccatttttgtccttgcttcgtagaataat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20592891 cagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacactggatttatagaggttccccatttttgtccttgcttcgtagaataat 20592793  T

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Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 20593214 - 20593124
Alignment:
Q  89 catataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttat 179  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||||||||||||| | |||||||    
T  20593214 catataacaatggaccaaattcatcattatcagctatcaaagtatatttgcgaacattaaagagtaggggagagaaaaacactagatttat 20593124  T

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Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 88 - 189
Target Start/End: Original strand, 19030954 - 19031053
Alignment:
Q  88 acatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttc 187  Q
    |||||| ||||| |||| ||||||| |||||||  |||||||||| ||||| || |||||| |||||||||| |||| ||||||| ||||||||||||||    
T  19030954 acatattacaattaacctaattcattattatcatatatcaaagtaaatttgtga-aattaa-gagtaagggaaagaagaacattgaatttatagaggttc 19031051  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 18173662 - 18173783
Alignment:
Q  69 gaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaac 168  Q
    |||| |||||||||||  | ||||||||||| |||  |||||||||| | ||   ||||||||| ||||| || |||||||||| || ||| |  | |||    
T  18173662 gaaattattcaatcacagagcatataacaatcaacttaattcatcatcaacataaatcaaagtaaatttgtgaaaattaaagagcaaaggaaaagagaac 18173761  T
Q  169 attggatttatagaggttcccc 190  Q
    |  |||||||||||||||||||    
T  18173762 accggatttatagaggttcccc 18173783  T

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Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 90 - 200
Target Start/End: Original strand, 19706828 - 19706938
Alignment:
Q  90 atataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattggatttatagaggttccc 189  Q
    |||||| ||| |||| |||||||||||||||   ||||||||| |||||| | |||||||||||| |||| |||| |||| | ||||||||||||||||     
T  19706828 atataataattaacctaattcatcattatcatacatcaaagtaaatttgcaagaattaaagagtaggggaaagaagaacactagatttatagaggttcct 19706927  T
Q  190 catttttgtcc 200  Q
    |||||| ||||    
T  19706928 cattttcgtcc 19706938  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 5642807 - 5642939
Alignment:
Q  64 ttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagaga 163  Q
    ||||||||  ||||||||||| |  |||||| |||| || |||||||||||||||||   |||||| || ||||||   | | ||||||||||||| |||    
T  5642807 ttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatcaaaataaatttgcagaagtaaaagagtaagggaaaga 5642906  T
Q  164 aaaacattggatttatagaggttccccattttt 196  Q
    | ||||    ||||||||||||||||| |||||    
T  5642907 agaacaccaaatttatagaggttcccccttttt 5642939  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 64 - 196
Target Start/End: Original strand, 5648659 - 5648791
Alignment:
Q  64 ttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagaga 163  Q
    ||||||||  ||||||||||| |  |||||| |||| || |||||||||||||||||   |||||| || ||||||   | | ||||||||||||| |||    
T  5648659 ttttagaatttattcaatcacaagtcatatagcaattaaacaaattcatcattatcatacatcaaaataaatttgcagaagtaaaagagtaagggaaaga 5648758  T
Q  164 aaaacattggatttatagaggttccccattttt 196  Q
    | ||||    ||||||||||||||||| |||||    
T  5648759 agaacaccaaatttatagaggttcccccttttt 5648791  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 21212134 - 21211993
Alignment:
Q  48 gttcttgacaatttgtttttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataatta 147  Q
    ||||||||| ||| | ||||| ||| ||| ||||||| || ||||| ||||| |||| ||| |||||  ||||  |||||||||| ||||||   |||||    
T  21212134 gttcttgacgattaggttttaaaaattatccaatcacaaagcatatgacaattaacctaatccatcaacatcatatatcaaagtaaatttgcagaaatta 21212035  T
Q  148 aagagtaagggagagaaaaacattggatttatagaggttcccc 190  Q
    |||||||||| | || | |||| ||||||||||||||||||||    
T  21212034 aagagtaaggaaaag-agaacactggatttatagaggttcccc 21211993  T

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Target: scaffold0039 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 32643 - 32512
Alignment:
Q  74 tattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaaaaacattgg 173  Q
    ||||||||||| || | ||||||||  |||| |||| ||||||||||  ||||| |  | ||||| |  | | ||||||||||||| |||| |||||||     
T  32643 tattcaatcacaaagcttataacaaataacctaattaatcattatcatatatcagaagaaatttgtggaattaaaagagtaagggaaagaagaacattga 32544  T
Q  174 atttatagaggttccccatttttgtccttgct 205  Q
    ||||||| ||||||||||||||  ||||||||    
T  32543 atttataaaggttccccattttcatccttgct 32512  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 185
Target Start/End: Complemental strand, 24590880 - 24590760
Alignment:
Q  65 tttagaaaatattcaatcacgaaacatataacaatgaaccaaattcatcattatcagctatcaaagtatatttgcgataattaaagagtaagggagagaa 164  Q
    |||||||  |||||||| || ||  ||||| |||| |||| |||||||||||||||   ||||||||| ||||||   |||||||||||||| || ||||    
T  24590880 tttagaatttattcaattacaaaggatatagcaattaacctaattcatcattatcatacatcaaagtaaatttgcagaaattaaagagtaagagaaagaa 24590781  T
Q  165 aaacattggatttatagaggt 185  Q
     || | | ||||| |||||||    
T  24590780 gaatagtagatttgtagaggt 24590760  T

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