View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_high_104 (Length: 227)
Name: NF20730_high_104
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_104 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 43436198 - 43436424
Alignment:
| Q |
1 |
agaagccaatcttctgcgcaaagaacgactcgggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctg |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43436198 |
agaagtcaatcttctgcgcaaagaacgactcgggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctg |
43436297 |
T |
|
| Q |
101 |
agcaagagcttccaatgtcaacatagcagcgccgtcatctgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43436298 |
agcaagagcttccaatgtcaacatagcagcgccgtcatccgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagta |
43436397 |
T |
|
| Q |
201 |
ttggcagtcacaagcggaggctccttt |
227 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
43436398 |
ttggcagtcacaagcggaggctccttt |
43436424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 7 - 227
Target Start/End: Original strand, 13826202 - 13826422
Alignment:
| Q |
7 |
caatcttctgcgcaaagaacgactcgggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaag |
106 |
Q |
| |
|
|||||||||| |||||| || |||||||||| |||||||||||| ||||||||||| ||| |||||||||||||| |||||||||||||| | |||||| |
|
|
| T |
13826202 |
caatcttctgtgcaaagtaccactcgggtgcgcggggttcaatattatacttcttggtgaatggaacccattttcttgcaaactctgatgtttcagcaag |
13826301 |
T |
|
| Q |
107 |
agcttccaatgtcaacatagcagcgccgtcatctgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggca |
206 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||| || || |||||||||||||||||||||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
13826302 |
agcttcaaatgtcaacatagcggcgccgtcatcagaaacatagcaggaaaccttatccactggatagtcaactgaaagaatagaaagtacagtattggca |
13826401 |
T |
|
| Q |
207 |
gtcacaagcggaggctccttt |
227 |
Q |
| |
|
||||| || |||||||||||| |
|
|
| T |
13826402 |
gtcacgagtggaggctccttt |
13826422 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 80; Significance: 1e-37; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 9477961 - 9477762
Alignment:
| Q |
28 |
actcgggtgcacggggttcaatagtatacttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagc |
127 |
Q |
| |
|
|||| ||||| || |||||||| ||| ||||||||||||||||||||||| || ||||| |||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
9477961 |
actcaggtgctcgtggttcaatttcatatttcttgcagaaaggaacccatttccttgcaaattctgatgtctcggcaagagcttcaaatgtcaacatagc |
9477862 |
T |
|
| Q |
128 |
agcgccgtcatctgatacgtagcaggaaaccttatccactggataatcaactgcaagaattgaaagtacagtattggcagtcacaagcggaggctccttt |
227 |
Q |
| |
|
||| || ||||| || || || || || |||||||||||||| || ||||| |||||||| || |||||||||||||| ||||||| || ||||||||| |
|
|
| T |
9477861 |
agcaccatcatcagagacataacatgagaccttatccactgggtagtcaacagcaagaatggatagtacagtattggctgtcacaattgggggctccttt |
9477762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 55 - 181
Target Start/End: Original strand, 44377540 - 44377666
Alignment:
| Q |
55 |
acttcttgcagaaaggaacccattttctcgcaaactctgatgtctgagcaagagcttccaatgtcaacatagcagcgccgtcatctgatacgtagcagga |
154 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||| || | | ||| ||||| ||||| | |||||| || ||||| ||||| || ||||| | |
|
|
| T |
44377540 |
acttcttgcagaatggaacccattttcttgcaaactctgaagtttctgaaagggcttcaaatgttagcatagctgcaccgtcgtctgagacatagcacgc |
44377639 |
T |
|
| Q |
155 |
aaccttatccactggataatcaactgc |
181 |
Q |
| |
|
|| || ||||| |||||||| ||||| |
|
|
| T |
44377640 |
cactttttccaccggataatctactgc |
44377666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University