View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_107 (Length: 220)

Name: NF20730_high_107
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_107
NF20730_high_107
[»] chr6 (1 HSPs)
chr6 (36-112)||(21800917-21800994)
[»] chr2 (2 HSPs)
chr2 (36-112)||(34681829-34681906)
chr2 (17-104)||(36773200-36773288)
[»] chr4 (4 HSPs)
chr4 (17-112)||(45687625-45687721)
chr4 (160-199)||(37781814-37781853)
chr4 (17-85)||(46147785-46147854)
chr4 (72-112)||(52467819-52467859)
[»] chr5 (2 HSPs)
chr5 (1-112)||(28277739-28277850)
chr5 (1-112)||(10282198-10282311)
[»] chr3 (5 HSPs)
chr3 (17-114)||(28074041-28074139)
chr3 (1-112)||(9666881-9666993)
chr3 (31-112)||(44700935-44701017)
chr3 (17-112)||(25796283-25796379)
chr3 (72-112)||(29196917-29196957)
[»] chr7 (2 HSPs)
chr7 (31-112)||(22269379-22269460)
chr7 (22-112)||(24526352-24526444)
[»] chr1 (2 HSPs)
chr1 (17-99)||(40816347-40816429)
chr1 (36-111)||(28266036-28266112)
[»] chr8 (1 HSPs)
chr8 (72-112)||(5688893-5688933)


Alignment Details
Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 21800994 - 21800917
Alignment:
Q  36 atcgtgccactatttttctagtga-aaacccagaccagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||||||||| ||||||| ||||| ||||||| ||| ||||||| ||||||||||||||||||| ||||| |||||||    
T  21800994 atcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtaccacgttgccctgcaaacgtgccac 21800917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 36 - 112
Target Start/End: Complemental strand, 34681906 - 34681829
Alignment:
Q  36 atcgtgccactatttttctagtga-aaacccagaccagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||||||||| ||||||| ||||| ||||||| ||| ||||||| ||||||| ||||||||||| ||||| |||||||    
T  34681906 atcgtgccacgatttttccagtgacaaacccaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 34681829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 36773288 - 36773200
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgccccgcaaa 104  Q
    |||||||||| || |||| |||||||||| ||||||| ||||  |||||| |  | ||||||||||||||| ||||||||||| |||||    
T  36773288 cgtgtcacgttcctcctggatcgtgccacaatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaa 36773200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 45687625 - 45687721
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||||||||| || |||| |||||||||| | ||||| ||||  |||||| |  | ||||||||||||||||||||||||||| ||||| |||||||    
T  45687625 cgtgtcacgttcctcctggatcgtgccacgacttttccagtggcaacccaaaaactgaaccattcaatcgtaccacgttgccctgcaaacgtgccac 45687721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 199
Target Start/End: Complemental strand, 37781853 - 37781814
Alignment:
Q  160 gttttcttctattatttcttatctttgtttctttgaatat 199  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  37781853 gttttcttctattatttcttatctttgttgctttgaatat 37781814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 46147785 - 46147854
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtga-aaacccagaccagaaccattcaatcg 85  Q
    |||| ||||| || |||| |||||||||| ||||||| ||||| ||||||| ||| ||||||||||||||    
T  46147785 cgtgccacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaacctgaaccattcaatcg 46147854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 52467819 - 52467859
Alignment:
Q  72 gaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  52467819 gaaccattcaatcgtgccacgttgccctgcaaacgtgccac 52467859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 28277850 - 28277739
Alignment:
Q  1 ccttatccgtctaaaacgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagaccagaaccattcaatcgtaccacgttgccccg 100  Q
    |||||||||||| || |||| |||   || |||| |||||||||| ||||||| | ||| |||||| |||  |||||| ||||||| ||||||||||| |    
T  28277850 ccttatccgtctgaatcgtgccacactcctcctggatcgtgccacaatttttccaatgacaacccaaacctaaaccatccaatcgtgccacgttgccctg 28277751  T
Q  101 caaatgtgccac 112  Q
    |||| |||||||    
T  28277750 caaacgtgccac 28277739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 10282198 - 10282311
Alignment:
Q  1 ccttatccgtctaaaacgtgtcacgtgccacctgcatcgtgccactatttttctagtga-aaacccaga-ccagaaccattcaatcgtaccacgttgccc 98  Q
    ||||||||||||  | |||| ||||| || |||| |||||||||| ||||||| || || ||||||| | || ||||||| ||||||| |||||||||||    
T  10282198 ccttatccgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagcgacaaacccaaaacctgaaccatccaatcgtgccacgttgccc 10282297  T
Q  99 cgcaaatgtgccac 112  Q
     ||||| |||||||    
T  10282298 tgcaaacgtgccac 10282311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 28074139 - 28074041
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgccccgcaaatgtgccacaa 114  Q
    |||| ||||| || |||| |||||||||| ||||||| ||||  |||||| |  | ||||||||||||||| ||||||||||| ||||| |||||||||    
T  28074139 cgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccacaa 28074041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 9666881 - 9666993
Alignment:
Q  1 ccttatccgtctaaaacgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgcccc 99  Q
    ||||||||||||  | |||| ||||| || |||| |||||||||| ||||||| ||||  |||||| |  | ||||| ||||||||| |||||||||||     
T  9666881 ccttatccgtctgcatcgtgccacgttcctcctggatcgtgccacgatttttccagtggcaacccaaaaactgaacccttcaatcgtgccacgttgccct 9666980  T
Q  100 gcaaatgtgccac 112  Q
    ||||| |||||||    
T  9666981 gcaaacgtgccac 9666993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Original strand, 44700935 - 44701017
Alignment:
Q  31 cctgcatcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||| |||||||||| ||||||| ||||  |||||| |  | ||||||||||||||| ||||||||||| ||||| |||||||    
T  44700935 cctggatcgtgccacgatttttccagtggtaacccaaaaactgaaccattcaatcgtgccacgttgccctgcaaacgtgccac 44701017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 112
Target Start/End: Original strand, 25796283 - 25796379
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtga-aaacccagaccagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||| ||||| || |||| |||||| ||| ||||||| ||||| ||||| | ||| ||| ||| ||||||| ||||||||||| ||||| |||||||    
T  25796283 cgtgccacgttcctcctggatcgtgtcacgatttttccagtgacaaaccaaaacctgaatcatccaatcgtgccacgttgccctgcaaacgtgccac 25796379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Original strand, 29196917 - 29196957
Alignment:
Q  72 gaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  29196917 gaaccattcaatcgtgccacgttgccctgcaaacgtgccac 29196957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 22269460 - 22269379
Alignment:
Q  31 cctgcatcgtgccactatttttctagtgaaaacccagaccagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    |||| |||||||||| ||||||| ||||| |||||| ||  |||||||  |||||| ||||||||||| ||||| |||||||    
T  22269460 cctggatcgtgccacgatttttccagtgacaacccaaacttgaaccatcaaatcgtgccacgttgccctgcaaacgtgccac 22269379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 24526352 - 24526444
Alignment:
Q  22 cacgtgccacctgcatcgtgccactatttttctagtga-aaacccaga-ccagaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    ||||| || |||| |||||||||| ||||||| ||||| ||||||| | || ||||||| ||||||| ||||||||||| ||||| |||||||    
T  24526352 cacgttcctcctggatcgtgccacgatttttccagtgacaaacccaaaacctgaaccatccaatcgtgccacgttgccctgcaaacgtgccac 24526444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 40816429 - 40816347
Alignment:
Q  17 cgtgtcacgtgccacctgcatcgtgccactatttttctagtgaaaacccagaccagaaccattcaatcgtaccacgttgcccc 99  Q
    |||| ||||| || |||| |||||||||| ||||||| | ||| || ||| ||| ||||||| ||||||||||| ||||||||    
T  40816429 cgtgccacgttcctcctggatcgtgccacgatttttccaatgacaaaccaaacctgaaccatccaatcgtaccatgttgcccc 40816347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 111
Target Start/End: Original strand, 28266036 - 28266112
Alignment:
Q  36 atcgtgccactatttttctagtgaaaacccagac-cagaaccattcaatcgtaccacgttgccccgcaaatgtgcca 111  Q
    |||||||||| ||||||| ||||  |||||| |  | ||||||||||||||| ||||||||||| ||||| ||||||    
T  28266036 atcgtgccacgatttttccagtggcaacccaaaatctgaaccattcaatcgtgccacgttgccctgcaaacgtgcca 28266112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 112
Target Start/End: Complemental strand, 5688933 - 5688893
Alignment:
Q  72 gaaccattcaatcgtaccacgttgccccgcaaatgtgccac 112  Q
    ||||||||||||||| ||||||||||| ||||| |||||||    
T  5688933 gaaccattcaatcgtgccacgttgccctgcaaacgtgccac 5688893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University