View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_13 (Length: 536)
Name: NF20730_high_13
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_13 |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 270 - 516
Target Start/End: Complemental strand, 47084221 - 47083976
Alignment:
| Q |
270 |
gtaaagtaatctgagtttctcttttaagttcatcttttacttctattttaaaccactaagctatttcaaagagattaacattggcttatcggaaagaagg |
369 |
Q |
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| T |
47084221 |
gtaaagtaatctgagtttctcttt-aagttcatcttttacttctactttaaactactaagctatttcaaagagattaacattggcttatcggaaagaaag |
47084123 |
T |
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| Q |
370 |
gagattaacacagtaaaagtggttctcaagtatctatgtaggcgcgaaaggacaagtcttgtatttgtaagtctcgggttcgagactgttagtgtcaaca |
469 |
Q |
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| T |
47084122 |
gagattaacaccgtaaaagtggttctcaagtatctatgtaggcgcgaaaggacaagtcttgtatttgtaagtctcggattcgagactgttagtgttaaca |
47084023 |
T |
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| Q |
470 |
taaacacttttataagtgatatttgagcttgaatgtctttacattga |
516 |
Q |
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| T |
47084022 |
taaacacttttataagtgatatttgagcttgaatgtctttacattga |
47083976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 163; Significance: 8e-87; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 2 - 205
Target Start/End: Original strand, 19728167 - 19728372
Alignment:
| Q |
2 |
cacaaaccaaaaatagatgctagagtgggatattaattaacatgagtatataacaacaacatagataaaatggtaattataccaattagctaatctcctc |
101 |
Q |
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| T |
19728167 |
cacaaaccaaaaatagatgctacagtgggatattaattaacatgagtacataacaacaacatggataaaatggtaattataccaattagctagtctcctc |
19728266 |
T |
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| Q |
102 |
tctcttttccttgctctgatggagagaaaccaaaaaattaaaatttggtctctcctatt--tctctctttgacttctctccttaaccaaacagacgaaat |
199 |
Q |
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| T |
19728267 |
tctcttttctttgctgtgatggagagaaaccaaaaagttaaaatttggtctctcctatttctctctctttgacttctctccttaaccaaacagaagaaat |
19728366 |
T |
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| Q |
200 |
gcacaa |
205 |
Q |
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|||||| |
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| T |
19728367 |
gcacaa |
19728372 |
T |
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