View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_17 (Length: 502)

Name: NF20730_high_17
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_17
NF20730_high_17
[»] chr3 (22 HSPs)
chr3 (163-370)||(37635401-37635608)
chr3 (163-370)||(37643690-37643897)
chr3 (163-370)||(37638315-37638522)
chr3 (163-370)||(37646603-37646810)
chr3 (163-370)||(37649516-37649723)
chr3 (163-370)||(37652433-37652643)
chr3 (395-492)||(37635280-37635377)
chr3 (395-492)||(37638194-37638291)
chr3 (395-492)||(37646482-37646579)
chr3 (395-492)||(37649395-37649492)
chr3 (396-492)||(37643569-37643665)
chr3 (413-492)||(37652307-37652386)
chr3 (17-77)||(37635696-37635756)
chr3 (17-77)||(37638610-37638670)
chr3 (17-77)||(37643984-37644044)
chr3 (17-77)||(37646897-37646957)
chr3 (21-77)||(37649810-37649866)
chr3 (19-51)||(37635691-37635723)
chr3 (19-51)||(37638605-37638637)
chr3 (19-51)||(37643979-37644011)
chr3 (19-51)||(37646892-37646924)
chr3 (19-51)||(37649805-37649837)
[»] chr2 (1 HSPs)
chr2 (439-492)||(5884252-5884305)
[»] chr4 (1 HSPs)
chr4 (452-492)||(32388617-32388657)


Alignment Details
Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 22)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37635608 - 37635401
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635608 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 37635509  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635508 ttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 37635409  T
Q  363 cttttatc 370  Q
    ||||||||    
T  37635408 cttttatc 37635401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37643897 - 37643690
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643897 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 37643798  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643797 ttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 37643698  T
Q  363 cttttatc 370  Q
    ||||||||    
T  37643697 cttttatc 37643690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37638522 - 37638315
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638522 gagaagtagagtgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 37638423  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638422 ttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 37638323  T
Q  363 cttttatc 370  Q
    ||||||||    
T  37638322 cttttatc 37638315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37646810 - 37646603
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  37646810 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaatg 37646711  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646710 ttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 37646611  T
Q  363 cttttatc 370  Q
    ||||||||    
T  37646610 cttttatc 37646603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37649723 - 37649516
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  37649723 gagaagtagagcgttcaataaggaattcacgatcagaaaattaagggaaaccaaagatgtttgaagggtggaaaaatgttgaagcaattgtataagaagg 37649624  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagtaaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 362  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649623 ttacaaatgcgttccatagaaaagcaactatcttcttccaataaggaggagataggaaataagagtttcatctcattctctcttttctactattctattt 37649524  T
Q  363 cttttatc 370  Q
    ||||||||    
T  37649523 cttttatc 37649516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 163 - 370
Target Start/End: Complemental strand, 37652643 - 37652433
Alignment:
Q  163 gagaagtaaagcgttcaataaggaattcaagatcagaaaattaagggaaaccaaagatgtttgaatggtggaaaaatgttgaagcaattgtataagaagg 262  Q
    |||||||| ||||||||| |||||||||||||||| ||||||  |||||||||||||| |||||||| |||||||||||||||||||| |||||||||||    
T  37652643 gagaagtagagcgttcaacaaggaattcaagatcacaaaatttcgggaaaccaaagatttttgaatgatggaaaaatgttgaagcaatggtataagaagg 37652544  T
Q  263 ttacaaatgcgttccatagaaaagcaactatcttcttccagt---aaggaggagataggaaataagagtttcatctcattctctcttttctactattcta 359  Q
    ||||||||| |||| ||| ||||||||||||||||||||| |   |||||||||||||||||||||||||||||||||||||||||||||||  ||| ||    
T  37652543 ttacaaatgtgttcaataaaaaagcaactatcttcttccaataagaaggaggagataggaaataagagtttcatctcattctctcttttctagcatttta 37652444  T
Q  360 tttcttttatc 370  Q
    |||||||||||    
T  37652443 tttcttttatc 37652433  T

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Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 492
Target Start/End: Complemental strand, 37635377 - 37635280
Alignment:
Q  395 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37635377 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37635280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 492
Target Start/End: Complemental strand, 37638291 - 37638194
Alignment:
Q  395 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37638291 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37638194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 492
Target Start/End: Complemental strand, 37646579 - 37646482
Alignment:
Q  395 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37646579 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37646482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 395 - 492
Target Start/End: Complemental strand, 37649492 - 37649395
Alignment:
Q  395 gggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37649492 gggtcgtggagcggtgttagcttttatgctatgccttttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37649395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 396 - 492
Target Start/End: Complemental strand, 37643665 - 37643569
Alignment:
Q  396 ggtcgtggagcggtgttagcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37643665 ggtcgtggagcggtgttagcttttatgctatgccttttaggtgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 37643569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 413 - 492
Target Start/End: Complemental strand, 37652386 - 37652307
Alignment:
Q  413 agcttttatgctatgcctcttaggcgtcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  37652386 agctttgatgctatgcctcttaggcgtcaccgtttatggtgaagatccttacatttactatacatggaaggttacctatg 37652307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37635756 - 37635696
Alignment:
Q  17 acatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37635756 acatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37635696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37638670 - 37638610
Alignment:
Q  17 acatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37638670 acatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37638610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37644044 - 37643984
Alignment:
Q  17 acatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 77  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37644044 acatgtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37643984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 17 - 77
Target Start/End: Complemental strand, 37646957 - 37646897
Alignment:
Q  17 acatgtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 77  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37646957 acatgtatatttaaattgacattactttagataatgtatatttgaatcgacattactttag 37646897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 37649866 - 37649810
Alignment:
Q  21 gtatatttgaatcgacattactttagataatgtatatttgaatcaacattactttag 77  Q
    |||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||    
T  37649866 gtatatttgaattgacattactttagataatgtatatttgaatcgacattactttag 37649810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37635723 - 37635691
Alignment:
Q  19 atgtatatttgaatcgacattactttagataat 51  Q
    |||||||||||||||||||||||||||||||||    
T  37635723 atgtatatttgaatcgacattactttagataat 37635691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37638637 - 37638605
Alignment:
Q  19 atgtatatttgaatcgacattactttagataat 51  Q
    |||||||||||||||||||||||||||||||||    
T  37638637 atgtatatttgaatcgacattactttagataat 37638605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37644011 - 37643979
Alignment:
Q  19 atgtatatttgaatcgacattactttagataat 51  Q
    |||||||||||||||||||||||||||||||||    
T  37644011 atgtatatttgaatcgacattactttagataat 37643979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37646924 - 37646892
Alignment:
Q  19 atgtatatttgaatcgacattactttagataat 51  Q
    |||||||||||||||||||||||||||||||||    
T  37646924 atgtatatttgaatcgacattactttagataat 37646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 19 - 51
Target Start/End: Complemental strand, 37649837 - 37649805
Alignment:
Q  19 atgtatatttgaatcgacattactttagataat 51  Q
    |||||||||||||||||||||||||||||||||    
T  37649837 atgtatatttgaatcgacattactttagataat 37649805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 439 - 492
Target Start/End: Complemental strand, 5884305 - 5884252
Alignment:
Q  439 tcaccgtttacggtgaagatccttacatttactatacatggaaggttacctatg 492  Q
    |||| ||||| |||||||| |||||||||||||  |||||||| ||||||||||    
T  5884305 tcactgtttatggtgaagacccttacatttacttcacatggaatgttacctatg 5884252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 32388657 - 32388617
Alignment:
Q  452 tgaagatccttacatttactatacatggaaggttacctatg 492  Q
    ||||||||||||  | |||||||||||||||||||||||||    
T  32388657 tgaagatccttatgtgtactatacatggaaggttacctatg 32388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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