View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_2 (Length: 888)

Name: NF20730_high_2
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_2
NF20730_high_2
[»] chr8 (1 HSPs)
chr8 (11-888)||(8548225-8549111)


Alignment Details
Target: chr8 (Bit Score: 658; Significance: 0; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 658; E-Value: 0
Query Start/End: Original strand, 11 - 888
Target Start/End: Complemental strand, 8549111 - 8548225
Alignment:
Q  11 agcagcacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatacacagttgaaaaaccaatgaagtcctcctcaaaccct 110  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8549111 agcaacacagagcctaaagagcatcgaacaaaatatcaaccatatccatatgcattgccaatgcacagttgaaaaaccaatgaagtcctcctcaaaccct 8549012  T
Q  111 cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8549011 cttatcactcaaaagtagcttaatgcatggaccaaaattagtgttgtagaagacaaaattcagaggcagaccaaacatacacaagcccttactctaagtc 8548912  T
Q  211 cacctttcnnnnnnnn-------gaaagaactct-aagtccacctnnnnnnngtaatttacactctccattctannnnnnnct-aaatacctaacggtta 301  Q
    || ||||                ||||||||||| ||||||||||       ||||| ||||||||||||||||       || |||||||||| |||||    
T  8548911 caactttttttttttttttttttgaaagaactcttaagtccacctaaaaaaagtaatatacactctccattctatttttttcttaaatacctaatggtta 8548812  T
Q  302 gactcacacactataaatactgaaaagaggagaacttgaaattcgaactccgacctcctctatggcaatgttcatagagctgccattttagcacgcactt 401  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  8548811 gactcacacactataaatactgagaagaggagaacttgaaattcgaactccgacctcctctacggcaatgttcatagagctgccattttagcacgcactt 8548712  T
Q  402 ataaaacattctcgattctatattacataagtcattttagcacaaaaaattgctcaatttataagttattttataatatcatcgagtattatttccaccc 501  Q
    |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  8548711 ataaaacactctcgattctatattacataagtcattttagcactaaaaattgctcaatttataagttattttataatatcattgagtattatttccaccc 8548612  T
Q  502 ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8548611 ctattattttacccttaatctctctttagagtattcttttcaattcttgtaattgtattttttaattgtcaatgcaagttggtccatttggtatgaattt 8548512  T
Q  602 aaaccatattaggcaaagacttcttgttgatatgtgtattttgatattacaagacaagaggttgtggaataccgagatttcnnnnnnnnnnnnggaagaa 701  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||            |||||||    
T  8548511 aaaccatattaggcaaagacttcttgttgatatgtgtattttgatattacaagacgagaggttgtggaatactaagatttcaaaaaagaaaaaggaagaa 8548412  T
Q  702 tatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaattttaataatatttacaaggactaaa 801  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  8548411 tatttaattttgttccttcaatatgagtgagataaaggaagaaaattaatattacaatgtattgcaggaaccaatttttataatatttacaaggactaaa 8548312  T
Q  802 ataagacaannnnnnnatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctttttaatctata 888  Q
    |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  8548311 ataagacaatttttttatagactaaaaacagaaaatgtttatatttgtaggatccaaatgtatatttaaacctctatttaatctata 8548225  T

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