View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20730_high_20 (Length: 465)

Name: NF20730_high_20
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20730_high_20
NF20730_high_20
[»] chr3 (14 HSPs)
chr3 (6-259)||(24761765-24762019)
chr3 (6-260)||(53352628-53352883)
chr3 (6-261)||(24815913-24816164)
chr3 (6-261)||(53027620-53027875)
chr3 (12-260)||(12538510-12538757)
chr3 (105-259)||(31685077-31685230)
chr3 (122-259)||(37982349-37982486)
chr3 (122-261)||(53973270-53973409)
chr3 (122-260)||(2549936-2550073)
chr3 (122-252)||(19882095-19882225)
chr3 (122-259)||(17681767-17681903)
chr3 (23-120)||(47763812-47763910)
chr3 (21-133)||(53351058-53351170)
chr3 (201-252)||(47763977-47764028)
[»] chr2 (7 HSPs)
chr2 (258-450)||(4715096-4715288)
chr2 (122-259)||(23348964-23349101)
chr2 (122-262)||(18355297-18355437)
chr2 (122-248)||(12741699-12741825)
chr2 (122-260)||(10328875-10329014)
chr2 (105-259)||(1615883-1616035)
chr2 (105-258)||(24454516-24454668)
[»] scaffold0096 (1 HSPs)
scaffold0096 (12-259)||(27410-27659)
[»] chr5 (9 HSPs)
chr5 (21-253)||(22004340-22004571)
chr5 (105-260)||(22009496-22009650)
chr5 (122-259)||(9043802-9043939)
chr5 (122-260)||(7473473-7473611)
chr5 (122-258)||(30442531-30442667)
chr5 (183-259)||(19085422-19085498)
chr5 (162-248)||(26840988-26841074)
chr5 (201-261)||(30463113-30463174)
chr5 (167-195)||(26851981-26852009)
[»] chr8 (10 HSPs)
chr8 (105-260)||(14677989-14678143)
chr8 (105-260)||(5657770-5657924)
chr8 (105-260)||(31100840-31100994)
chr8 (105-259)||(27541527-27541679)
chr8 (99-242)||(5662583-5662725)
chr8 (184-259)||(24788079-24788154)
chr8 (184-259)||(23738657-23738731)
chr8 (206-260)||(33689362-33689416)
chr8 (200-259)||(24787157-24787218)
chr8 (200-259)||(8158461-8158520)
[»] chr7 (5 HSPs)
chr7 (105-259)||(1262088-1262241)
chr7 (122-260)||(43071366-43071504)
chr7 (105-259)||(26909949-26910102)
chr7 (105-259)||(48849775-48849928)
chr7 (183-252)||(22007347-22007416)
[»] scaffold0035 (1 HSPs)
scaffold0035 (105-259)||(35063-35216)
[»] chr4 (3 HSPs)
chr4 (105-259)||(29863329-29863482)
chr4 (198-259)||(12506436-12506497)
chr4 (184-236)||(24260243-24260294)
[»] scaffold0045 (1 HSPs)
scaffold0045 (105-261)||(11602-11757)
[»] chr6 (7 HSPs)
chr6 (105-252)||(33045399-33045545)
chr6 (130-260)||(10092511-10092641)
chr6 (150-259)||(3065698-3065806)
chr6 (99-252)||(8976411-8976564)
chr6 (183-259)||(16246702-16246778)
chr6 (183-260)||(30908414-30908492)
chr6 (184-258)||(4660222-4660295)
[»] scaffold0596 (1 HSPs)
scaffold0596 (122-260)||(653-791)
[»] chr1 (1 HSPs)
chr1 (183-260)||(50990906-50990983)
[»] scaffold0157 (1 HSPs)
scaffold0157 (198-259)||(13980-14041)
[»] scaffold0475 (1 HSPs)
scaffold0475 (184-250)||(7520-7585)
[»] scaffold0093 (1 HSPs)
scaffold0093 (167-195)||(43794-43822)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 6 - 259
Target Start/End: Original strand, 24761765 - 24762019
Alignment:
Q  6 gtgataaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcatggg-aaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||| ||||||||||||||||||| |||    
T  24761765 gtgagaaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggtggaaagtcataactaagagcaattaatgtatcaggcatggggaaa 24761864  T
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    | |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24761865 taaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcattgttttggagccaaaaccatttagg 24761964  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  24761965 tttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgat 24762019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 6 - 260
Target Start/End: Original strand, 53352628 - 53352883
Alignment:
Q  6 gtgataaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcatg-ggaaa 104  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||||||||||||||||||||| |||||    
T  53352628 gtgagaaggaggatttggggaaacaataacaacatttaatgtactcatgaaaggtggaaagccataactaagagcatttaatgtatcaggcatgaggaaa 53352727  T
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    | ||||||||||||||||||| |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  53352728 taaaagtttgaagtcaaattaaatcaaaggatgagatgcacactgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccgtttagg 53352827  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||||||||||||    
T  53352828 tttagagtttgcaaagtcattagcaatgttaagaaggattagatataagtatgata 53352883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 261
Target Start/End: Complemental strand, 24816164 - 24815913
Alignment:
Q  6 gtgataaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcat-gggaaa 104  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||| |||| |||||||     |||| ||||||    
T  24816164 gtgagaaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggtggaaagccataactaagagcaattaatgt-----gcatggggaaa 24816070  T
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    | |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24816069 taaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggccagcatcgttttggagccaaaaccatttagg 24815970  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgataa 261  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24815969 tttagggtttgcaaagtcattagcaatgttaagaaggattagatataagtatgataa 24815913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 6 - 261
Target Start/End: Original strand, 53027620 - 53027875
Alignment:
Q  6 gtgataaggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcatgggaaat 105  Q
    |||| ||| |||||||||||||||||||||||||||||||| |||||||||||| |||||| | ||||||| || ||||||||||||| |||||||||||    
T  53027620 gtgagaagaaggattttgggaaacaataacaacatttaatgcactcatgaaaggtggaaagccataactaagagaatttaatgtatcaagcatgggaaat 53027719  T
Q  106 gaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggt 205  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||    
T  53027720 aaaagtttgaagtcaaattagatcaaaggatgagatgcatgctgagccaaatgatgagatccaacggtcagcatcattttggagtcaaaaccatttaggt 53027819  T
Q  206 ttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgataa 261  Q
    |||||||||| ||||| ||||||| |||||| ||||||||||||||||||||||||    
T  53027820 ttagggtttgtaaagttattagcagtgttaagaaggattagatataagtatgataa 53027875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 12 - 260
Target Start/End: Original strand, 12538510 - 12538757
Alignment:
Q  12 aggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcatgggaaatgaaagt 111  Q
    |||||||||||||||||||| ||||| |||||||||| ||||||| || |||||| | ||||||| |||||||||  ||||||||||||||| |||||||    
T  12538510 aggaggattttgggaaacaacaacaatatttaatgtagtcatgaatggtggaaagccataactaagagcatttaacatatcaggcatgggaattgaaagt 12538609  T
Q  112 ttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttaggg 211  Q
    ||||||| ||||||||||||||||||  ||||||||| ||||||||||||||||||||||| |  | | | |||||||||||||||||||||||||||||    
T  12538610 ttgaagttaaattagatcaaaggatgtgatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccatttaggtttaggg 12538708  T
Q  212 tttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||||| ||||||| || ||||| || ||||||||||||||||||||    
T  12538709 tttgcaaaatcattagaaaggttaacaaagattagatataagtatgata 12538757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 31685230 - 31685077
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| |||||||||||||||| |||||| |  | |  |||||||||||||||||||||||    
T  31685230 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagattcaacggcctcccttattttggagccaaaaccatttagg 31685132  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31685131 tttagggtttgcaaagtcattagcaatgttaataaagattagatataagtatgat 31685077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 37982486 - 37982349
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||| ||||||||| ||||||||| |||||||||||||||||||||||||  | | ||||||||||||||||||||||||||||||||||||||  |    
T  37982486 attagattaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 37982387  T
Q  222 cattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||||| || |||||||||||||||||||    
T  37982386 cattagcaatgttaacaaagattagatataagtatgat 37982349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 122 - 261
Target Start/End: Original strand, 53973270 - 53973409
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||| ||| ||||||||||||||||||||||| |  | | | ||||||||||||||||||||||||||||||||||||  |    
T  53973270 attagatcaaaggatgagatgcaggcttagccaaatgatgagatccaacggcctcccttgatttggagccaaaaccatttaggtttagggtttgcaattt 53973369  T
Q  222 cattagcaatgttaataaggattagatataagtatgataa 261  Q
    ||||||||||||||| || |||||||||||||||||||||    
T  53973370 cattagcaatgttaacaaagattagatataagtatgataa 53973409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 2550073 - 2549936
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    |||| |||||||||||| ||||||||| ||||||||||| ||||||||||| |  | | ||||||||||||||| |||||||||||||||||||||||||    
T  2550073 attaaatcaaaggatgagatgcatgcttagccaaatgat-agatccaacggcctcccttgttttggagccaaaatcatttaggtttagggtttgcaaagt 2549975  T
Q  222 cattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||||||||||||| | ||||||||||||||||||||    
T  2549974 cattagcaatgttaattaagattagatataagtatgata 2549936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 122 - 252
Target Start/End: Original strand, 19882095 - 19882225
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| |||||||||||||||||||||||||  | | |||||||||||||||||||||||||||||||||| |||  |    
T  19882095 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttacaattt 19882194  T
Q  222 cattagcaatgttaataaggattagatataa 252  Q
    ||||||||||||||| || ||||||||||||    
T  19882195 cattagcaatgttaacaaagattagatataa 19882225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 17681903 - 17681767
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| | ||||||||||||||||||||| |  | | | ||||||||||||||||||||||||||||||||||||| |    
T  17681903 attagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggccccccttg-tttggagccaaaaccatttaggtttagggtttgcaaaat 17681805  T
Q  222 cattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||| ||||||||| || |||||||||||||||||||    
T  17681804 cattaacaatgttaacaaagattagatataagtatgat 17681767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 120
Target Start/End: Original strand, 47763812 - 47763910
Alignment:
Q  23 gggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcat-gggaaatgaaagtttgaagtca 120  Q
    ||||||||||||||| |||||||| | |||||||||| |||||| | ||||||| ||||||||| |||||||| || ||||||||||||||||||||||    
T  47763812 gggaaacaataacaatatttaatgcaatcatgaaaggtggaaagccataactaagagcatttaaggtatcaggtatggggaaatgaaagtttgaagtca 47763910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 21 - 133
Target Start/End: Original strand, 53351058 - 53351170
Alignment:
Q  21 ttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcat-gggaaatgaaagtttgaagtc 119  Q
    ||||||||||||||||||||||||||||||||||||    |||||| | |||| || |||| | || |||||||| || ||||||||||| |||||||||    
T  53351058 ttgggaaacaataacaacatttaatgtactcatgaacattggaaagccataaccaagagca-tcaacgtatcaggtatggggaaatgaaactttgaagtc 53351156  T
Q  120 aaattagatcaaag 133  Q
    | ||||||||||||    
T  53351157 acattagatcaaag 53351170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 47763977 - 47764028
Alignment:
Q  201 taggtttagggtttgcaaagtcattagcaatgttaataaggattagatataa 252  Q
    ||| |||||| |||||||||| ||||||||||||||  ||||||||||||||    
T  47763977 tagatttaggttttgcaaagttattagcaatgttaagtaggattagatataa 47764028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 168; Significance: 7e-90; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 258 - 450
Target Start/End: Complemental strand, 4715288 - 4715096
Alignment:
Q  258 ataaatcgaattactggaataaaatttgttgcctataacacacactaatgtnnnnnnngttgaacaaaacttctgttggtgaaagatcaattgcaacaaa 357  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  4715288 ataaatcgaattactggaataaaatttgttgcctaaaacacacactaatgtaaaaaaagttgaacaaaacttctgttggtgaaagatcaattgcaacaaa 4715189  T
Q  358 caagtgcataaataaatatctgcaccaaaacataatcaactaaataacgtacggtcattttaatttaacaaaaatcacataagagatattgtt 450  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4715188 caagtgcataaataaatatctgcaccaaaacataatcaactaaataacgtacggtcattttaatttaacaaaaatcacataagagatattgtt 4715096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 122 - 259
Target Start/End: Original strand, 23348964 - 23349101
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  23348964 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 23349063  T
Q  222 cattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||||| || |||||||||||||||||||    
T  23349064 cattagcaatgttaacaaagattagatataagtatgat 23349101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 122 - 262
Target Start/End: Original strand, 18355297 - 18355437
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||| ||||||||| ||||||||| ||||||||||||||||||||||  |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  18355297 attagattaaaggatgagatgcatgcttagccaaatgatgagatccaacgacctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 18355396  T
Q  222 cattagcaatgttaataaggattagatataagtatgataaa 262  Q
    ||||||||||||||| || ||||| ||||||||||||||||    
T  18355397 cattagcaatgttaacaaagattaaatataagtatgataaa 18355437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 122 - 248
Target Start/End: Complemental strand, 12741825 - 12741699
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  12741825 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcctttgttttggagccaaaaccatttaggtttagggtttgcaattt 12741726  T
Q  222 cattagcaatgttaataaggattagat 248  Q
    ||||||||||||||| || ||||||||    
T  12741725 cattagcaatgttaacaaagattagat 12741699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 10328875 - 10329014
Alignment:
Q  122 attagatcaaa-ggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaag 220  Q
    ||||||||||| |||||| ||||||||| ||||||||||||||||||||||| |  | | ||||| || ||||||| |||||||||||||||||||||      
T  10328875 attagatcaaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttagaaccaaaacaatttaggtttagggtttgcaatt 10328974  T
Q  221 tcattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||||||||||||| || ||||||||||||||||||||    
T  10328975 tcattagcaatgttaacaaagattagatataagtatgata 10329014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 1615883 - 1616035
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||||||||||||||||||||| ||||||||| |||||||||||| ||||||||| ||  | | | |||||||| ||||||||||||     
T  1615883 tgaaagtttgac-tcaaattagatcaaaggatgagatgcatgcttagccaaatgatgcgatccaacgatctcccttg-tttggagcaaaaaccatttaga 1615980  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||  | || ||||||||||| ||||||||| || |||| |||||||| |||||    
T  1615981 tttaatggttacaaagtcattaacaatgttaacaaagattggatataaggatgat 1616035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 105 - 258
Target Start/End: Complemental strand, 24454668 - 24454516
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||||||| ||||||||||||||||| ||| |||   ||||||||||||||||||||||| |  | | | ||||| ||| |||  |||||||    
T  24454668 tgaaagtttgaagtcagattagatcaaaggatgagatgaatgtcaagccaaatgatgagatccaacggccctccttg-tttggcgcctaaaaaatttagg 24454570  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatga 258  Q
    |||||| ||||||| |   |||||||||||||| | ||||||||||||||||||    
T  24454569 tttaggatttgcaatggtcttagcaatgttaattaagattagatataagtatga 24454516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 145; Significance: 4e-76; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 12 - 259
Target Start/End: Complemental strand, 27659 - 27410
Alignment:
Q  12 aggaggattttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaa---gcatttaatgtatcaggcatgggaaatgaa 108  Q
    |||||| |||||| |||||| ||||| |||||||||| |||||||||| |||||| | ||||||| |   ||||||||  ||||||||||||||||||||    
T  27659 aggagggttttggaaaacaacaacaatatttaatgtagtcatgaaaggtggaaagccataactaagacgagcatttaacatatcaggcatgggaaatgaa 27560  T
Q  109 agtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggttta 208  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | | ||||||||||||||||||||||||||    
T  27559 agtttgaagtcaaattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttg-tttggagccaaaaccatttaggttta 27461  T
Q  209 gggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||| |||||||||||||||| || |||||||||||||||||||    
T  27460 gggtttgcaaaatcattagcaatgttaacaaagattagatataagtatgat 27410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 21 - 253
Target Start/End: Original strand, 22004340 - 22004571
Alignment:
Q  21 ttgggaaacaataacaacatttaatgtactcatgaaaggcggaaagtcctaactaaaagcatttaatgtatcaggcatggg-aaatgaaagtttgaagtc 119  Q
    ||||||||||||||||||||||||||||||||||||    |||||| | |||| || |||||| || |||||||||||||| |||||||| ||||||||     
T  22004340 ttgggaaacaataacaacatttaatgtactcatgaacattggaaagccataaccaagagcatt-aacgtatcaggcatggggaaatgaaactttgaagtg 22004438  T
Q  120 aaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaa 219  Q
    | ||||||||||||||||| ||| ||||||||||||||||||||||||||||| |  | | |  |||| ||| |||| || |||||||||||||||||||    
T  22004439 acattagatcaaaggatgatatgaatgctgagccaaatgatgagatccaacggaccaccttg-attggcgcctaaactatctaggtttagggtttgcaaa 22004537  T
Q  220 gtcattagcaatgttaataaggattagatataag 253  Q
     |||||||||||||||| || |||||||||||||    
T  22004538 atcattagcaatgttaacaaagattagatataag 22004571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 22009496 - 22009650
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||    
T  22009496 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagg 22009594  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||||||||||| |||||||||||||||| || ||||||||||||||||||||    
T  22009595 tttagggtttgcaaattcattagcaatgttaacaaagattagatataagtatgata 22009650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 122 - 259
Target Start/End: Complemental strand, 9043939 - 9043802
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  9043939 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 9043840  T
Q  222 cattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||||| || |||||||||||||||||||    
T  9043839 cattagcaatgttaacaaagattagatataagtatgat 9043802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 7473473 - 7473611
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||| ||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  7473473 attagatcaaaggatgagatgcatgcttagctaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 7473572  T
Q  222 cattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  7473573 cattagcaatgttaacaaagattagatataagtatgata 7473611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 122 - 258
Target Start/End: Original strand, 30442531 - 30442667
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  30442531 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 30442630  T
Q  222 cattagcaatgttaataaggattagatataagtatga 258  Q
    ||||||||||||||| || ||||||||||||| ||||    
T  30442631 cattagcaatgttaacaaagattagatataagcatga 30442667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 183 - 259
Target Start/End: Original strand, 19085422 - 19085498
Alignment:
Q  183 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| |||||||||||||    
T  19085422 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatgat 19085498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 162 - 248
Target Start/End: Original strand, 26840988 - 26841074
Alignment:
Q  162 agatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagat 248  Q
    |||||||||||||  | | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || ||||||||    
T  26840988 agatccaacggtctcccttgttttggagccaaaaccatttaggtttagggtttgcaaaatcattagcaatgttaacaaagattagat 26841074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 201 - 261
Target Start/End: Original strand, 30463113 - 30463174
Alignment:
Q  201 taggtttagggttt-gcaaagtcattagcaatgttaataaggattagatataagtatgataa 261  Q
    |||||||||||||| |||| || ||||||| |||||| || |||||||||||||||||||||    
T  30463113 taggtttagggttttgcaaggtaattagcattgttaacaaagattagatataagtatgataa 30463174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 26852009 - 26851981
Alignment:
Q  167 caacggtcagcatcgttttggagccaaaa 195  Q
    |||||||||||||||||||||||||||||    
T  26852009 caacggtcagcatcgttttggagccaaaa 26851981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 14677989 - 14678143
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||    
T  14677989 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagg 14678087  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||||||| ||||||||||||||||||||| || ||||||||||||||||||||    
T  14678088 tttagggttttcaaagtcattagcaatgttaacaaagattagatataagtatgata 14678143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 105 - 260
Target Start/End: Complemental strand, 5657924 - 5657770
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||| |  | | |||||||||||||||| |||||||    
T  5657924 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagccaaaactatttagg 5657826  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||||||||||||||||||||||| ||||| || ||||||||||||||||||||    
T  5657825 tttagggtttgcaaagtcattagcaacgttaacaaagattagatataagtatgata 5657770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 105 - 260
Target Start/End: Original strand, 31100840 - 31100994
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| || |||||| | ||||||||||||||| ||||| |  | | ||||||||||||||||||||||||    
T  31100840 tgaaagtttgac-tcagattagatcaaaggatgagatacatgcttaaccaaatgatgagatcgaacggcctcccttgttttggagccaaaaccatttagg 31100938  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    |||||| ||||||||||||||||||||||||| || ||||||||||||||||||||    
T  31100939 tttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgata 31100994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 27541527 - 27541679
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||    | | |||| ||||||||| |||||||||    
T  27541527 tgaaagtttgat-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcgtcccttgttt-ggagccaaagccatttagg 27541624  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  27541625 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 27541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 5662725 - 5662583
Alignment:
Q  99 gggaaatgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaacca 198  Q
    |||||||||||||||||||||| |||| |||||||||||| ||| ||||  ||||||||||||||||| ||||| |  | | |  |||| ||| |||  |    
T  5662725 gggaaatgaaagtttgaagtcagattaaatcaaaggatgagatgaatgcctagccaaatgatgagatctaacggacctccttg-attggcgcctaaaaaa 5662627  T
Q  199 tttaggtttagggtttgcaaagtcattagcaatgttaataagga 242  Q
    | ||||||||||||||||||||||||||||||| ||||| ||||    
T  5662626 tctaggtttagggtttgcaaagtcattagcaatattaattagga 5662583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 24788079 - 24788154
Alignment:
Q  184 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||| |||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  24788079 ttggcgccaaaactaattaggtttagggtttgcaaagtcattagcaatgttaattaagattagatataagtatgat 24788154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 184 - 259
Target Start/End: Complemental strand, 23738731 - 23738657
Alignment:
Q  184 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  23738731 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 23738657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 206 - 260
Target Start/End: Original strand, 33689362 - 33689416
Alignment:
Q  206 ttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||    
T  33689362 ttagggtctgcaaagtcattagcaatgttaacaaagattagatataggtatgata 33689416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 259
Target Start/End: Original strand, 24787157 - 24787218
Alignment:
Q  200 ttaggtttagggtttgcaaagtcattagcaatgttaat--aaggattagatataagtatgat 259  Q
    |||| |||||| ||||||||||||||||||||||||||   | |||||||||||||||||||    
T  24787157 ttagttttaggatttgcaaagtcattagcaatgttaattataagattagatataagtatgat 24787218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 259
Target Start/End: Complemental strand, 8158520 - 8158461
Alignment:
Q  200 ttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||| ||||||| || ||||||| |||||| ||  ||||||||||||||||||    
T  8158520 ttaggtttaggttttgcaaggtaattagcattgttaacaaaaattagatataagtatgat 8158461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 1262241 - 1262088
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||    | | ||||||||||||||||||||||||    
T  1262241 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcttcccttgttttggagccaaaaccatttagg 1262143  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  1262142 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 1262088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 122 - 260
Target Start/End: Original strand, 43071366 - 43071504
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||||||||||||||||  |    
T  43071366 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttaggtttagggtttgcaattt 43071465  T
Q  222 cattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||||||||||| || ||||||||||||||||||||    
T  43071466 cattagcaatgttaacaaagattagatataagtatgata 43071504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 26909949 - 26910102
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||||||| |||||||| ||||  | | |||||||||||||| |||||||||    
T  26909949 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgataagatccaatggtctcccttgttttggagccaaatccatttagg 26910047  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||||||| |||||||||||||| || |||||||||||||||||||    
T  26910048 tttagggtttgcaaagttattagcaatgttaacaaagattagatataagtatgat 26910102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 48849775 - 48849928
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||      | | ||||||||||||||||||||||||    
T  48849775 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaaaatcccttgttttggagccaaaaccatttagg 48849873  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||| ||| ||||||||||||||||||||| || |||||||||||||||||||    
T  48849874 tttaggatttacaaagtcattagcaatgttaacaaagattagatataagtatgat 48849928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 22007416 - 22007347
Alignment:
Q  183 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataa 252  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||  |||||||||||    
T  22007416 tttggagccaaaaccatttagatttagggtttgtaaagtcattagcaatgttaacaaaaattagatataa 22007347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 105 - 259
Target Start/End: Complemental strand, 35216 - 35063
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| |||||||||||||||||||||   |  | | ||||||||||||||||||||||||    
T  35216 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacaacctcccttgttttggagccaaaaccatttagg 35118  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  35117 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 35063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 29863329 - 29863482
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||||    
T  29863329 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgctcagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagg 29863427  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||| ||||||||||||||| ||||||||||| || |||||||||||||||||||    
T  29863428 tttacggtttgcaaagtcatgagcaatgttaacaaagattagatataagtatgat 29863482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 259
Target Start/End: Complemental strand, 12506497 - 12506436
Alignment:
Q  198 atttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  12506497 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 12506436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 236
Target Start/End: Complemental strand, 24260294 - 24260243
Alignment:
Q  184 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaa 236  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||||    
T  24260294 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaa 24260243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 89; Significance: 1e-42; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 105 - 261
Target Start/End: Original strand, 11602 - 11757
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| |||| |||||||||||| ||||||||| | ||||||||||||||||||||| |  | | ||||||||| |||||||| |||||    
T  11602 tgaaagtttgac-tcagattaaatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttgttttggagtcaaaaccagttagg 11700  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgataa 261  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  11701 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataagtatgataa 11757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 4e-42; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 105 - 252
Target Start/End: Original strand, 33045399 - 33045545
Alignment:
Q  105 tgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttagg 204  Q
    |||||||||||  ||| ||||||||||||||||| ||||||||| | ||||||||||||||||||||| |  | |  |||||||||||||||||||||||    
T  33045399 tgaaagtttgac-tcagattagatcaaaggatgagatgcatgcttaaccaaatgatgagatccaacggcctcccttattttggagccaaaaccatttagg 33045497  T
Q  205 tttagggtttgcaaagtcattagcaatgttaataaggattagatataa 252  Q
    |||||||||||||||||||||||||||||||| || ||||||||||||    
T  33045498 tttagggtttgcaaagtcattagcaatgttaacaaagattagatataa 33045545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 130 - 260
Target Start/End: Complemental strand, 10092641 - 10092511
Alignment:
Q  130 aaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagca 229  Q
    |||| |||| ||||||||| ||||||||||||||||||||||| |  | | ||||||||||||||||||||||| |||||||||||||||||||||| ||    
T  10092641 aaagaatgagatgcatgcttagccaaatgatgagatccaacggcctcccttgttttggagccaaaaccatttagatttagggtttgcaaagtcattaaca 10092542  T
Q  230 atgttaataaggattagatataagtatgata 260  Q
    ||||||| || ||||||||||||||||||||    
T  10092541 atgttaacaaagattagatataagtatgata 10092511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 150 - 259
Target Start/End: Complemental strand, 3065806 - 3065698
Alignment:
Q  150 agccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagata 249  Q
    |||||||||||||||||||||||||  | | | |||||||||||||||||||||||||||||||||||||||||||||| ||||||| || |||||||||    
T  3065806 agccaaatgatgagatccaacggtctcccttg-tttggagccaaaaccatttaggtttagggtttgcaaagtcattagccatgttaacaaagattagata 3065708  T
Q  250 taagtatgat 259  Q
    ||||||||||    
T  3065707 taagtatgat 3065698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 99 - 252
Target Start/End: Complemental strand, 8976564 - 8976411
Alignment:
Q  99 gggaaatgaaagtttgaagtcaaattagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaacca 198  Q
    ||||||||||||| ||   ||| ||||||||||||||||| ||||||| | ||| |||| ||||||||||||||||  | |  |||||||||||||||||    
T  8976564 gggaaatgaaagtctgcgatcagattagatcaaaggatgagatgcatgtttagctaaataatgagatccaacggtctcccttattttggagccaaaacca 8976465  T
Q  199 tttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataa 252  Q
    ||||||||||| ||||| ||||||||||||||| |||| || ||||||||||||    
T  8976464 tttaggtttagagtttgtaaagtcattagcaatattaacaaagattagatataa 8976411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 183 - 259
Target Start/End: Complemental strand, 16246778 - 16246702
Alignment:
Q  183 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  16246778 tttggagccaaaaccatttaggattagggtttgcaaagtcattagcaatgttcacaaagattagatataagtatgat 16246702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 183 - 260
Target Start/End: Original strand, 30908414 - 30908492
Alignment:
Q  183 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatat-aagtatgata 260  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||||| ||||||||||    
T  30908414 tttggagccaaaaccatttagatttagggtttgcaaagtcattagcaatgttaacaaagattagatataaagtatgata 30908492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 184 - 258
Target Start/End: Original strand, 4660222 - 4660295
Alignment:
Q  184 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatga 258  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  4660222 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattatatataagtatga 4660295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0596 (Bit Score: 83; Significance: 4e-39; HSPs: 1)
Name: scaffold0596
Description:

Target: scaffold0596; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 122 - 260
Target Start/End: Complemental strand, 791 - 653
Alignment:
Q  122 attagatcaaaggatgaaatgcatgctgagccaaatgatgagatccaacggtcagcatcgttttggagccaaaaccatttaggtttagggtttgcaaagt 221  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||||||||| |  | |  |||||||| ||||||||||||||||||||||||||||  |    
T  791 attagatcaaaggatgagatgcatgcttagccaaatgatgagatccaacggcctcccttattttggagtcaaaaccatttaggtttagggtttgcaattt 692  T
Q  222 cattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||||||||||| || ||| ||||||||||||||||    
T  691 cattagcaatgttaacaaagatcagatataagtatgata 653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 183 - 260
Target Start/End: Complemental strand, 50990983 - 50990906
Alignment:
Q  183 tttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgata 260  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||||||||||| ||||    
T  50990983 tttggagccaaaaccatttaggtttagggtttgcaaagttatcagcaatgttaacaaagattagatataagtaagata 50990906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 198 - 259
Target Start/End: Original strand, 13980 - 14041
Alignment:
Q  198 atttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatataagtatgat 259  Q
    ||||||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||    
T  13980 atttaggtttaggatttgcaaagtcattagcaatgttaacaaagattagatataagtatgat 14041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0475 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 7520 - 7585
Alignment:
Q  184 ttggagccaaaaccatttaggtttagggtttgcaaagtcattagcaatgttaataaggattagatat 250  Q
    |||||||||||| | |||||| ||||||||||||||||||||||||||||||| || ||||| ||||    
T  7520 ttggagccaaaaac-tttagggttagggtttgcaaagtcattagcaatgttaacaaagattatatat 7585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0093 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 167 - 195
Target Start/End: Complemental strand, 43822 - 43794
Alignment:
Q  167 caacggtcagcatcgttttggagccaaaa 195  Q
    |||||||||||||||||||||||||||||    
T  43822 caacggtcagcatcgttttggagccaaaa 43794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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