View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_25 (Length: 424)
Name: NF20730_high_25
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 29856772 - 29857180
Alignment:
| Q |
1 |
caccttaagccaagaagggacattgctacgatatccagtagcaagaacaactgcatcaacttgactcttttccccattcacaaggtcaacatagccatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| ||||||||||||||| |
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| T |
29856772 |
caccttaagccaagaagggacattgctacgatatccagtagcaagaacaactgcatcaacttgattcttttcaccattaacaagttcaacatagccatta |
29856871 |
T |
|
| Q |
101 |
gtaaacctcttaattccaggcacaacttttatgtgaccagatctaattttttccaaggtgccaatatccaaaacaggggtcttaccctttgtgttcttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
29856872 |
gtaaacctcttaattccaggcacaacttttatgtgaccagatctaattttctccaaggttccaatatccaaaacaggggtcttaccctttgtgttcttaa |
29856971 |
T |
|
| Q |
201 |
gctccaaaggaccttccaatggccttttaagaccatacttctctatattaccaaacactaaccaagccaaagtcaacaaaatcttgtcaactatccaaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29856972 |
gctccaaaggaccttccaatggccttttaagaccatacttctctatattaccaaacactaaccaagccaaaatcaacaaaatcttgtcaactatccaaac |
29857071 |
T |
|
| Q |
301 |
tggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaaacatgaacctgttaaaccaagaacacaacaacc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |
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| T |
29857072 |
tggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaaacatgaacctgttcaaccaaaaacacaacaacc |
29857171 |
T |
|
| Q |
401 |
ttaattagt |
409 |
Q |
| |
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||||||||| |
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| T |
29857172 |
ttaattagt |
29857180 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 17408707 - 17408658
Alignment:
| Q |
2 |
accttaagccaagaagggacattgctacgatatccagtagcaagaacaac |
51 |
Q |
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| T |
17408707 |
accttaagccaagatggtacattgcttctatagccagtagcaagaacaac |
17408658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 39732895 - 39733276
Alignment:
| Q |
1 |
caccttaagccaagaagggacattgctacgatatccagtagcaagaacaactgcatcaacttgactcttttccccattcacaaggtcaacatagcca--- |
97 |
Q |
| |
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||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||| | | |||||| ||||| ||||| ||||| | ||| |
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| T |
39732895 |
cacctgaagccaagaagggacattgctgcggtaaccagtagcaagaacaactgcatcaatatcaagcttttcaccattaacaagctcaacttcaccattt |
39732994 |
T |
|
| Q |
98 |
ttagtaaacctcttaattccaggcacaacttttatgtgaccagatctaattttttccaaggtgccaatatccaaaacaggggtcttaccctttgtgttct |
197 |
Q |
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||| ||| || || |||||||| ||||| ||||| | ||| ||||||||||| ||||||| ||||| |||||||| || ||||| || ||||||| |
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| T |
39732995 |
ttattaattcttttgattccaggtacaacatttatatcaccggatctaattttctccaaggcaccaatgtccaaaaccggtgtctttcctacggtgttct |
39733094 |
T |
|
| Q |
198 |
taagctccaaaggaccttccaatggccttttaagaccatacttctctatattaccaaacactaaccaagccaaagtcaacaaaatcttgtcaactatcca |
297 |
Q |
| |
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| | || ||| ||||| |||| ||||| | |||||| || || || | ||| || | ||||| | |||| ||||||||| ||||| || ||||| |
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| T |
39733095 |
tcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatcca |
39733194 |
T |
|
| Q |
298 |
aactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaaacatgaacctgt |
379 |
Q |
| |
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|| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| || | |||||||||||| |
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|
| T |
39733195 |
aagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgt |
39733276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 39840063 - 39839682
Alignment:
| Q |
1 |
caccttaagccaagaagggacattgctacgatatccagtagcaagaacaactgcatcaacttgactcttttccccattcacaaggtcaacatagcca--- |
97 |
Q |
| |
|
||||| ||||||||||||||||||||| || || ||||||||||||||||||||||||| | | |||||| ||||| ||||| ||||| | ||| |
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| T |
39840063 |
cacctgaagccaagaagggacattgctgcggtaaccagtagcaagaacaactgcatcaatatcaagcttttcaccattaacaagctcaacttcaccattt |
39839964 |
T |
|
| Q |
98 |
ttagtaaacctcttaattccaggcacaacttttatgtgaccagatctaattttttccaaggtgccaatatccaaaacaggggtcttaccctttgtgttct |
197 |
Q |
| |
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||| ||| || || |||||||| ||||| ||||| | ||| ||||||||||| ||||||| ||||| |||||||| || ||||| || ||||||| |
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| T |
39839963 |
ttattaattcttttgattccaggtacaacatttatatcaccggatctaattttctccaaggcaccaatgtccaaaaccggtgtctttcctacggtgttct |
39839864 |
T |
|
| Q |
198 |
taagctccaaaggaccttccaatggccttttaagaccatacttctctatattaccaaacactaaccaagccaaagtcaacaaaatcttgtcaactatcca |
297 |
Q |
| |
|
| | || ||| ||||| |||| ||||| | |||||| || || || | ||| || | ||||| | |||| ||||||||| ||||| || ||||| |
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|
| T |
39839863 |
tcaactgcaatggacccattgatggtcttttgataccatatttttccatgtcacccaaaatgaaccatgtcaaaatcaacaaaagtttgtccacaatcca |
39839764 |
T |
|
| Q |
298 |
aactggtaaccatttcatcatcataactgccaatccaaatgttgatttcccaaaaacttctctaggcaaaacatgaacctgt |
379 |
Q |
| |
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|| ||||||||| |||| ||||||||| || ||| |||| |||||| | ||||| | |||||| || | |||||||||||| |
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|
| T |
39839763 |
aagtggtaaccacttcaacatcataaccgctaattcaaaagttgatattccaaatatttctcttggtagcacatgaacctgt |
39839682 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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