View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_29 (Length: 414)
Name: NF20730_high_29
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_29 |
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Alignment Details
Target: chr7 (Bit Score: 77; Significance: 1e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 128 - 212
Target Start/End: Complemental strand, 21285976 - 21285892
Alignment:
| Q |
128 |
gttctaaaactcaccaacatgtagcattgtcattctttctgatatatattcccacatattttacaagtatatattgaaaacattt |
212 |
Q |
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| T |
21285976 |
gttctaaaactcaccaacatgcagcattgtcattctttcttatatatattcccacatattttacaagtatatattgaaaacattt |
21285892 |
T |
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Target: chr7; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 21286103 - 21286005
Alignment:
| Q |
1 |
ttcgttagtcattctaatcaaataatacttcatataaacctatatttcatgtttgaagatgccaatctattcactaaattagtgaatcaattcaaagtg |
99 |
Q |
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| T |
21286103 |
ttcgttattcattctaatcaaataattcttcatataaacctatatttcatttttgaagatgtcaatctatttactaaatgagtgaatcaattcaaagtg |
21286005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 322 - 389
Target Start/End: Complemental strand, 41755080 - 41755013
Alignment:
| Q |
322 |
gatattgtatgaattgttttcatttaaggatttcaatagtgggttcaagatctaaagaccaaaggaat |
389 |
Q |
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| T |
41755080 |
gatattgcttgaattgttttcattcaaggatttcgatagtgggttgaagatctaaagacgaaaggaat |
41755013 |
T |
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