View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_34 (Length: 395)
Name: NF20730_high_34
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_34 |
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| [»] chr4 (3 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 51 - 395
Target Start/End: Complemental strand, 1744035 - 1743686
Alignment:
| Q |
51 |
ttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaactttctagatcaa-----attatatcaaatatgttggtgaaagat |
145 |
Q |
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| T |
1744035 |
ttattgagtttataaatgattaagccattaaatttgttgatcattctcatcttaactttctagatcaacatttattatatcaaatatgttattgaaagat |
1743936 |
T |
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| Q |
146 |
tttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtctgcaagaaattcctttcctttacaa |
245 |
Q |
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| T |
1743935 |
tttcctcaagaatgttgggaatcaatcttcaaattccttggccaaggaaaagatttggagtctgtttctatggtctgcaagaaattcctttccattacaa |
1743836 |
T |
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| Q |
246 |
accgagttaaattctctctaacaatacatgattccactgttttattcctttctcggctactctcgagatttttaagtctcaaagtcatagattttagtca |
345 |
Q |
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| T |
1743835 |
accaagtgaaattttctttaacaatacatgattccactattctattcctttctcggctactctcgagatttttaaggctcaaagccatagattttagtca |
1743736 |
T |
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| Q |
346 |
cttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggt |
395 |
Q |
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| T |
1743735 |
cttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggt |
1743686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 121 - 394
Target Start/End: Original strand, 2006422 - 2006695
Alignment:
| Q |
121 |
tatatcaaatatgttggtgaaagattttccacaagaatgttgggaatcaatcttcaaactccttgaccaaggacatgatttggagtctgtttctatggtc |
220 |
Q |
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| T |
2006422 |
tatatcaaatatattagtgaaagattttcctcaagaatgttgggaatcaatcttaagattccttggccaaggagatgatttggagtctgtttctatggtc |
2006521 |
T |
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| Q |
221 |
tgcaagaaattcctttcctttacaaaccgagttaaattctctctaacaatacatgattccactgttttattcctttctcggctactctcgagatttttaa |
320 |
Q |
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| T |
2006522 |
tgcaagaaattcctttccattacaaaccgagttaaagcatctctaacagtacatgatcccactgttccattccttcctcggctactcttgggatttttaa |
2006621 |
T |
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| Q |
321 |
gtctcaaagtcatagattttagtcacttcaatggtgaactagaagacatccttcatcaaatttcacaatctggg |
394 |
Q |
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| T |
2006622 |
ggctcaaagtcttagattttagccacttcaatggtgaacttgaaggcttgcttcatcaagtttcacaatctggg |
2006695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 28 - 106
Target Start/End: Complemental strand, 1749187 - 1749110
Alignment:
| Q |
28 |
actttcactcaaatatgattggtttattgagttgataaatgattaagccattacatttgttgatcattctcatcttaac |
106 |
Q |
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| T |
1749187 |
actttcact-aaatgtggttggttcattgagctaagaaattattaagccattacatttgttgatcattctcatcttaac |
1749110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 44577538 - 44577589
Alignment:
| Q |
344 |
cacttcaatggtgaactagaagacatccttcatcaaatttcacaatctgggt |
395 |
Q |
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| T |
44577538 |
cacttcaatggtgaactagaatgcttgcttcatcaaatttcacaaactgggt |
44577589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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