View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_high_40 (Length: 377)
Name: NF20730_high_40
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_40 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 1 - 347
Target Start/End: Original strand, 43721261 - 43721607
Alignment:
| Q |
1 |
actaaccataaagatcagagttcttcctctcaggaagcagacaaagtagaaactgaggtgccccaggaagagtagactgagcgtgagctaacattttctc |
100 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||| ||||||||||| ||||||| || ||||||||||| |||||||| || | | | ||||||||| |
|
|
| T |
43721261 |
actaaccatatagatcagtgttcttcctctcagggagcagacaaaggagaaacttgggagccccaggaagtttagactgaacgggttcaagcattttctc |
43721360 |
T |
|
| Q |
101 |
aactctgaccgcgggcgatgcatgcctaaactgaccattttcttcaaagaaggtataaggtttttcaataatctgccaaaagcaaacgaaacagaat--a |
198 |
Q |
| |
|
|||||||||| | |||| ||| |||||| |||||||||||||||||||| | |||||| ||||| || | |||| ||||||||||||||||| | |
|
|
| T |
43721361 |
aactctgaccacaggcggagcaagcctaacctgaccattttcttcaaagacatcaaaaggttgttcaacaagttaccaagagcaaacgaaacagaatgga |
43721460 |
T |
|
| Q |
199 |
gttagctccttttgatgcttgtcagtaaatatgctgtaaaagaacttacaattcctttcgtttttccaattcttatcagatcatccacaagtctttgcgc |
298 |
Q |
| |
|
|||||| ||| | || | |||||||||||||||||| ||||||||||||||||||| || |||| | | |||||| | |||||||| ||| | |
|
|
| T |
43721461 |
gttagcccctatctat--atttcagtaaatatgctgtaatagaacttacaattcctttcattcctccacatttgatcagaaccctcacaagtccctgcac |
43721558 |
T |
|
| Q |
299 |
atcacaacgtgcagaaaagtttaccacagcccagttcactattttaaca |
347 |
Q |
| |
|
|||| | || ||||||||||| |||||| ||| ||| ||||||||||| |
|
|
| T |
43721559 |
atcatatcgcgcagaaaagttcaccacataccatttctctattttaaca |
43721607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 213 - 347
Target Start/End: Complemental strand, 38116404 - 38116270
Alignment:
| Q |
213 |
atgcttgtcagtaaatatgctgtaaaagaacttacaattcctttcgtttttccaattcttatcagatcatccacaagtctttgcgcatcacaacgtgcag |
312 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||| || |||| | |||||||||| |||||||| | || |||||||||| |||| |
|
|
| T |
38116404 |
atgcttgtcagtaaataagatgtaaaagaacttacaattcctttcattcctccacattttatcagatccctcacaagtcctcgcacatcacaacgcgcag |
38116305 |
T |
|
| Q |
313 |
aaaagtttaccacagcccagttcactattttaaca |
347 |
Q |
| |
|
||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
38116304 |
aaaagttcaccacagcccatttctctattttaaca |
38116270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 3 - 52
Target Start/End: Complemental strand, 38124786 - 38124737
Alignment:
| Q |
3 |
taaccataaagatcagagttcttcctctcaggaagcagacaaagtagaaa |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
38124786 |
taaccataaagatcagagttcttcctctcaggaagcagacaaagcagaaa |
38124737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 4 - 149
Target Start/End: Complemental strand, 38116622 - 38116477
Alignment:
| Q |
4 |
aaccataaagatcagagttcttcctctcaggaagcagacaaagtagaaactgaggtgccccaggaagagtagactgagcgtgagctaacattttctcaac |
103 |
Q |
| |
|
|||||||||||||||||||||| ||||||| ||| |||||||| ||||||| || || ||||| || | |||||| | || | |||||||| ||||| |
|
|
| T |
38116622 |
aaccataaagatcagagttctttctctcagaaaggagacaaagaagaaacttgggagcaccaggtagtttggactgaacatgttcaaacattttttcaac |
38116523 |
T |
|
| Q |
104 |
tctgaccgcgggcgatgcatgcctaaactgaccattttcttcaaag |
149 |
Q |
| |
|
| |||| || | |||| |||||||||| ||||||||||||||| |
|
|
| T |
38116522 |
acggaccagaggtggtgcacgcctaaactggccattttcttcaaag |
38116477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 327
Target Start/End: Complemental strand, 38124563 - 38124463
Alignment:
| Q |
227 |
atatgctgtaaaagaacttacaattcctttcgtttttccaattcttatcagatcatccacaagtctttgcgcatcacaacgtgcagaaaagtttaccaca |
326 |
Q |
| |
|
||||||||||| ||||||||||||||||||| || |||| | |||| ||||| |||||||| | || ||||||| || ||||||||||| |||||| |
|
|
| T |
38124563 |
atatgctgtaacagaacttacaattcctttcattcctccacattttattagatccctcacaagtcctcgcacatcacagcgagcagaaaagttcaccaca |
38124464 |
T |
|
| Q |
327 |
g |
327 |
Q |
| |
|
| |
|
|
| T |
38124463 |
g |
38124463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 347
Target Start/End: Original strand, 4671708 - 4671757
Alignment:
| Q |
298 |
catcacaacgtgcagaaaagtttaccacagcccagttcactattttaaca |
347 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||| ||||||||||| |
|
|
| T |
4671708 |
catcacaacgtgcagaaaagtttaccacatcccatttctctattttaaca |
4671757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 239 - 331
Target Start/End: Complemental strand, 35467128 - 35467036
Alignment:
| Q |
239 |
agaacttacaattcctttcgtttttccaattcttatcagatcatccacaagtctttgcgcatcacaacgtgcagaaaagtttaccacagccca |
331 |
Q |
| |
|
||||||||||||||||||| | ||||||||||| || | ||| |||||||| | | ||||||| ||||||||||||||| |||||||||| |
|
|
| T |
35467128 |
agaacttacaattcctttcatatttccaattctaattatatccctcacaagtcctcgtacatcacatcgtgcagaaaagtttgccacagccca |
35467036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 266
Target Start/End: Complemental strand, 14916644 - 14916602
Alignment:
| Q |
224 |
taaatatgctgtaaaagaacttacaattcctttcgtttttcca |
266 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| || ||||| |
|
|
| T |
14916644 |
taaatatgctgtaacagaacttacaattcctttcattcttcca |
14916602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University