View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_57 (Length: 301)
Name: NF20730_high_57
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_57 |
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Alignment Details
Target: chr5 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 28419659 - 28419928
Alignment:
| Q |
14 |
gagatgaaaaactgttactctatgaatacatgccaaacaaaaaccttgattcatttctttttggtttgtaannnnnnnaaaagtctaatatttatcataa |
113 |
Q |
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| T |
28419659 |
gagatgaaaaactgttaatctatgaatacatgccaaacaaaagccttgattcatttctttttggtttgtaatttttttaaaagtctaatatttatcataa |
28419758 |
T |
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| Q |
114 |
taaaatgacttcttttataggattgnnnnnnntatatataaccatttcattgtactatcttggcagatccaactcaaagtaaattgttaagctggtcaat |
213 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
28419759 |
taaaatgacttcttttataggattgaaaaaa--atatataaccatttcattgtactatcttggcagatccaactcaaagtaaattgttaagttggtcaat |
28419856 |
T |
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| Q |
214 |
gcgtcttaacatcttgaatgcaattgctcgagaaattcaatatcttcatcaagattctagattaaggatcat |
285 |
Q |
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| T |
28419857 |
gcgtcttaacatcttgaatgcaattgctcgaggaattcaatatcttcatcaagattctagattaaggatcat |
28419928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 28432890 - 28433161
Alignment:
| Q |
14 |
gagatgaaaaactgttactctatgaatacatgccaaacaaaaaccttgattcatttctttttggtttgtaannnnnnnaaaagtctaatatttatcataa |
113 |
Q |
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| T |
28432890 |
gagatgaaagactcttactctatgaatacatgccaaacaaaagccttgacttatttctttttggtttgtatttttttaaaatgtttgatatttattataa |
28432989 |
T |
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| Q |
114 |
taaaatgacttcttttataggattgnnnnnnntatatataaccatttcattgt-actatcttggcagatccaactcaaagtaaattgttaagctggtcaa |
212 |
Q |
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| T |
28432990 |
taaaatgacttcttttataggattggaaaaaaaa-acctaaccaattcatcgggactatcttgacagatccaactcaaagtaaattgttaagttggtcat |
28433088 |
T |
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| Q |
213 |
tgcgtcttaacatcttgaatgcaattgctcgagaaattcaatatcttcatcaagattctagattaaggatcat |
285 |
Q |
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| T |
28433089 |
tgcgttttaacatcttgaatgcaattgctcgaggaattcaatatcttcatcaagattctagattaaggatcat |
28433161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 221 - 285
Target Start/End: Complemental strand, 22689486 - 22689422
Alignment:
| Q |
221 |
aacatcttgaatgcaattgctcgagaaattcaatatcttcatcaagattctagattaaggatcat |
285 |
Q |
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| T |
22689486 |
aacatgttgaatgcaattgctcgaggacttctttatcttcatcaagattctatattaagaatcat |
22689422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 285
Target Start/End: Original strand, 23555537 - 23555645
Alignment:
| Q |
177 |
cagatccaactcaaagtaaattgttaagctggtcaatgcgtcttaacatcttgaatgcaattgctcgagaaattcaatatcttcatcaagattctagatt |
276 |
Q |
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||||||||| |||||||||| ||||| ||||| | |||| ||||||||||| ||| ||||||||||| ||| ||| | ||||||||||| ||||| |
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| T |
23555537 |
cagatccaattcaaagtaaactgttagattggtcgacgcgttttaacatcttgtatggaattgctcgaggtcttctttatttacatcaagattcaagatt |
23555636 |
T |
|
| Q |
277 |
aaggatcat |
285 |
Q |
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|||||||| |
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| T |
23555637 |
gaggatcat |
23555645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 254 - 285
Target Start/End: Original strand, 1050413 - 1050444
Alignment:
| Q |
254 |
tatcttcatcaagattctagattaaggatcat |
285 |
Q |
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| T |
1050413 |
tatcttcatcaagattctagattaaggatcat |
1050444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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