View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_58 (Length: 300)
Name: NF20730_high_58
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_58 |
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| [»] scaffold0957 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 195; Significance: 1e-106; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 54 - 292
Target Start/End: Complemental strand, 15514242 - 15514004
Alignment:
| Q |
54 |
caaagggaacaataacattatattttgggtattgatcctctaatttctaagggaaaaggaccctaaagggaaactaaaaatattaaatgagggaattata |
153 |
Q |
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| T |
15514242 |
caaagggaacaataacattatattttgggtattgatcctctaattcttaagggaaaaagacccaaaagggaaactaaaaatattaaacgagggaattata |
15514143 |
T |
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| Q |
154 |
aatttgaatagacatggtaaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttaggtgtcgatcctatggtt |
253 |
Q |
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| T |
15514142 |
aatttgaatagacatggtaaaatatactaatactaccaacacctttacttggaaagggacctaacaataacattattgtttaggtgtcgatcctatggtt |
15514043 |
T |
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| Q |
254 |
ccaaagatataggaatgctataagggagaataatcctat |
292 |
Q |
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| T |
15514042 |
tcaaaggtatagggatgctataagggagagtaatcctat |
15514004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 54 - 237
Target Start/End: Original strand, 15857830 - 15858010
Alignment:
| Q |
54 |
caaagggaacaataacattatattttgggtattgatcctctaatttctaagggaaaaggaccctaaagggaaactaaaaatattaaatgagggaattata |
153 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |
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| T |
15857830 |
caaagggaacaataacattataatttgggtattgatcctctaattcctaagggaaaaagaccctaaaggaaaactaaaaatattaaacgagggaattata |
15857929 |
T |
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| Q |
154 |
aatttgaatagacatggtaaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttagg |
237 |
Q |
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| T |
15857930 |
aatttgaatagacatggtaaaatatac---taataccaacacctttgattggaaagggacctaacaataatattattgtatagg |
15858010 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 137 - 277
Target Start/End: Original strand, 15451490 - 15451630
Alignment:
| Q |
137 |
taaatgagggaattataaatttgaatagacatggtaaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttag |
236 |
Q |
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| T |
15451490 |
taaatgagggaattataaatttgaattgacgtggtaaaatatactaatactaccaacaccttttattggaaagggacctaacaataacattattgtttag |
15451589 |
T |
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| Q |
237 |
gtgtcgatcctatggttccaaagatataggaatgctataag |
277 |
Q |
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| T |
15451590 |
gtgtcgatcctatggttccaaagatataggaatgctataag |
15451630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 165 - 292
Target Start/End: Complemental strand, 15424474 - 15424347
Alignment:
| Q |
165 |
acatggtaaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttaggtgtcgatcctatggttccaaagatata |
264 |
Q |
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| T |
15424474 |
acatggtaaaatatactaatactaccaacacctttaattggaaagggacctaacaatagcattattgtttaggtgtcgatcccatggttccaaaggtata |
15424375 |
T |
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| Q |
265 |
ggaatgctataagggagaataatcctat |
292 |
Q |
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| T |
15424374 |
gggatgctataagggagagtaatcctat |
15424347 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 15465725 - 15465822
Alignment:
| Q |
151 |
ataaatttgaatagacatggtaaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttaggtgtcgatccta |
248 |
Q |
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| T |
15465725 |
ataaatttgaattgacgtggtaaactataccaatactaccaacaccttttatccgaaagggacctaacaataacattattgtttaggtgtcgatccta |
15465822 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 172 - 258
Target Start/End: Complemental strand, 15426549 - 15426463
Alignment:
| Q |
172 |
aaaatataccaatactaccaacacctttaattggaaagggacctaacaataacattattgtttaggtgtcgatcctatggttccaaa |
258 |
Q |
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| T |
15426549 |
aaaatatactaatactaccaacaccttttattggaaagggacctagaaatatcattattgtttaggtgacgatcctatggtcccaaa |
15426463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 54 - 132
Target Start/End: Complemental strand, 15426704 - 15426626
Alignment:
| Q |
54 |
caaagggaacaataacattatattttgggtattgatcctctaatttctaagggaaaaggaccctaaagggaaactaaaa |
132 |
Q |
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| T |
15426704 |
caaagggaacaataacattatattttgggtattgatcctctaattcctaagttaaaaataccctaaagggaaactaaaa |
15426626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 54 - 130
Target Start/End: Original strand, 15465600 - 15465680
Alignment:
| Q |
54 |
caaagggaacaataacattatattttgggtatt----gatcctctaatttctaagggaaaaggaccctaaagggaaactaa |
130 |
Q |
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| T |
15465600 |
caaagggaacaataacattatatttttggtattaattgatcctctaattcctaagggaaagagaccctaaagggaaactaa |
15465680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0957 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0957
Description:
Target: scaffold0957; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 235 - 292
Target Start/End: Original strand, 436 - 493
Alignment:
| Q |
235 |
aggtgtcgatcctatggttccaaagatataggaatgctataagggagaataatcctat |
292 |
Q |
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| T |
436 |
aggtgacgatcctatggttccaaaggtatagggatgctataagggagagtaatcctat |
493 |
T |
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