View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20730_high_59 (Length: 299)
Name: NF20730_high_59
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_59 |
 | |
|
| [»] scaffold0061 (2 HSPs) |
| | |
|
| [»] scaffold0017 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 291
Target Start/End: Complemental strand, 751823 - 751551
Alignment:
| Q |
19 |
tataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcata |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751823 |
tataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcaactcttttgtgtctttaggccatgtttcaggttcatcata |
751724 |
T |
|
| Q |
119 |
cccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaagttcctcaacttttgtcattaaaccaatctttctt |
218 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
751723 |
cccttggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaagttcctcaacttttgtcattaaaccaatctttctt |
751624 |
T |
|
| Q |
219 |
gtttgcaatgatatctttctagatttctccttttgaataaattccacagatactcttccacgacccctttgct |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
751623 |
gtttgcaatgatatctttctagatttctccttttgaataaattccacagatactcttccacgacccatttgct |
751551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 20 - 293
Target Start/End: Complemental strand, 745919 - 745646
Alignment:
| Q |
20 |
ataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatac |
119 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | ||||||| ||||||||| |||||| || ||| || |||||||||||||||||||||||||| ||| |
|
|
| T |
745919 |
ataggtcttaggacgcctatcaattgttgtctcatagtacttttgaagaactctttgtacctctcttttgtctttaggccatgtttcaggttcaatatat |
745820 |
T |
|
| Q |
120 |
ccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaagttcctcaacttttgtcattaaaccaatctttcttg |
219 |
Q |
| |
|
|| |||||||||| ||| ||||| || | |||| |||| |||||||||||||||||||||||| ||||| |||| | ||||||||| |||||| |
|
|
| T |
745819 |
ccttggccttcaaggttaggagcgtacaagatcaaacaaacatcaacatcacaaagaatggaaaattcctttgctttctttattaaaccatcctttctct |
745720 |
T |
|
| Q |
220 |
tttgcaatgatatctttctagatttctccttttgaataaattccacagatactcttccacgacccctttgctac |
293 |
Q |
| |
|
||||||||| ||||||||||||| ||||||||||||| | ||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
745719 |
tttgcaatgttatctttctagatctctccttttgaatgagttccatagatattcttccacgacccattttctac |
745646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 20 - 284
Target Start/End: Original strand, 7327611 - 7327875
Alignment:
| Q |
20 |
ataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatac |
119 |
Q |
| |
|
|||| ||||| ||||||| ||| ||||||| ||||||||| ||||||| ||||||||||| ||| || |||||||||||||||||||||||||| | | |
|
|
| T |
7327611 |
atagatcttaggacgcctgtcacttgttgtattatagtacttttgaaggattctttgcacctctcttttgtctttaggccatgtttcaggttcaacgaat |
7327710 |
T |
|
| Q |
120 |
ccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaagttcctcaacttttgtcattaaaccaatctttcttg |
219 |
Q |
| |
|
|| ||| |||||||||| |||||||| ||||| |||||| |||||||||||||||||||||||| ||| | |||||| ||||||| ||| ||||||| |
|
|
| T |
7327711 |
ccttgggcttcaaagttaggagcatagagaattacacaaacatcaacatcacaaagaatggaaaattcattcacttttttcattaatccattctttctct |
7327810 |
T |
|
| Q |
220 |
tttgcaatgatatctttctagatttctccttttgaataaattccacagatactcttccacgaccc |
284 |
Q |
| |
|
| || |||| | ||||||| ||||||||||||||||| | ||||| ||||| ||||||||||||| |
|
|
| T |
7327811 |
tctgaaatgttgtctttcttgatttctccttttgaatgagttccatagatattcttccacgaccc |
7327875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 4e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 20 - 293
Target Start/End: Original strand, 51792701 - 51792974
Alignment:
| Q |
20 |
ataggtcttaagacgcctatcaattgttgtgttatagtacctttgaagaattctttgcacatcttttgtgtctttaggccatgtttcaggttcatcatac |
119 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||||||||||||| ||||||| ||||||| || || || |||| ||||||||||||||||||||| || | |
|
|
| T |
51792701 |
atagatcttaggacgcctatcacttgttgtgttatagtacttttgaaggattctttctaccgctcttttgtccttaggccatgtttcaggttcagcaaat |
51792800 |
T |
|
| Q |
120 |
ccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatggaaagttcctcaacttttgtcattaaaccaatctttcttg |
219 |
Q |
| |
|
|| | ||| |||| ||||||||||| |||| |||||| |||||||||||||||||||||||| ||| | |||||| ||||||| ||| |||||| |
|
|
| T |
51792801 |
cctcgacctacaaaattgggagcatagagaactacacaaacatcaacatcacaaagaatggaaaattcattcacttttttcattaatccatcctttctct |
51792900 |
T |
|
| Q |
220 |
tttgcaatgatatctttctagatttctccttttgaataaattccacagatactcttccacgacccctttgctac |
293 |
Q |
| |
|
|||| |||| | ||| | ||||||||||||||||| | ||||| ||||| ||||||||||||| ||| |||| |
|
|
| T |
51792901 |
tttgaaatgttgacttccgtgatttctccttttgaatgagttccatagatattcttccacgacccatttcctac |
51792974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 2628 - 2752
Alignment:
| Q |
81 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatgg |
180 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | || | || || |||||||| ||||||||||| |||| |||||| ||||||||| ||||||||| | |
|
|
| T |
2628 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcatagagaactacacaaacatcaacattacaaagaatag |
2727 |
T |
|
| Q |
181 |
aaagttcctcaacttttgtcattaa |
205 |
Q |
| |
|
||| ||| | |||||| ||||||| |
|
|
| T |
2728 |
aaaattcattcacttttttcattaa |
2752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 81 - 205
Target Start/End: Original strand, 8139 - 8263
Alignment:
| Q |
81 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaatgg |
180 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | || | || || |||||||| ||||||||||| |||| |||||| ||||||||| ||||||||| | |
|
|
| T |
8139 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcatagagaactacacaaacatcaacattacaaagaatag |
8238 |
T |
|
| Q |
181 |
aaagttcctcaacttttgtcattaa |
205 |
Q |
| |
|
||| ||| | |||||| ||||||| |
|
|
| T |
8239 |
aaaattcattcacttttttcattaa |
8263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 81 - 177
Target Start/End: Original strand, 129638 - 129732
Alignment:
| Q |
81 |
tcttttgtgtctttaggccatgtttcaggttcatcatacccctggccttcaaagttgggagcataaagaatcacacaagcatcaacatcacaaagaa |
177 |
Q |
| |
|
|||||||||||||| |||||| |||||||| | || | || || |||||||| |||||||||| |||| |||||| |||||||||||||||||| |
|
|
| T |
129638 |
tcttttgtgtcttttggccatacttcaggtttagcaaatccttgcccttcaaaattgggagcat--agaactacacaaacatcaacatcacaaagaa |
129732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University