View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20730_high_61 (Length: 290)
Name: NF20730_high_61
Description: NF20730
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20730_high_61 |
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Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 12 - 271
Target Start/End: Original strand, 18924491 - 18924753
Alignment:
| Q |
12 |
acagagtggaacagtgtattagagaaactccaatacattaccaaagtgcatccctcaagtcatgccagagtcagagagattataagaataagttttaatg |
111 |
Q |
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| T |
18924491 |
acagagtggaacagtgtattagagaaactccaacaaattaacagaatgtatcacttaagtcatgccagagtccaagagattataagaataagttttcatg |
18924590 |
T |
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| Q |
112 |
gtttaagtgatcgtgatgtggaaaatatgtttcttgatatagctttaaacttatgtgggatggaccaggatgatgtgattaagatattaaaagacagtgg |
211 |
Q |
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| T |
18924591 |
gtttacgtgatggtgatgtggaaaatatgtttcttgatatagctttaaacttatgtgggatggaccaggatgatgtgattaagatattaaaagacagtgt |
18924690 |
T |
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| Q |
212 |
a---tattctgcagaaattggaataagagtccttctacaacgaagacttgtaactgtggatag |
271 |
Q |
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| T |
18924691 |
atattattctgcagaaattcgaataagagtccttctacaacgaagacttgtaactgtggatag |
18924753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 141 - 271
Target Start/End: Complemental strand, 34720901 - 34720771
Alignment:
| Q |
141 |
tttcttgatatagctttaaacttatgtgggatggaccaggatgatgtgattaagatattaaaagacagtggatattctgcagaaattggaataagagtcc |
240 |
Q |
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| T |
34720901 |
tttcttgcgatagctttaaacttagttgggatggatcgggatgaagtaattcagaaattaaaagaccgtggacattcttcagaaaatggaatagatgtcc |
34720802 |
T |
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| Q |
241 |
ttctacaacgaagacttgtaactgtggatag |
271 |
Q |
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| T |
34720801 |
ttgtacaacgaagacttgtaaccgtagatag |
34720771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 96 - 271
Target Start/End: Complemental strand, 7888263 - 7888088
Alignment:
| Q |
96 |
agaataagttttaatggtttaagtgatcgtgatgtggaaaatatgtttcttgatatagctttaaacttatgtgggatggaccaggatgatgtgattaaga |
195 |
Q |
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| T |
7888263 |
agaataagttttgatggtttaagtgatgatgatgtgaaagatatattccttgatattgcttttttctttattggtatggaccgggaagacgtaactaaga |
7888164 |
T |
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| Q |
196 |
tattaaaagacagtggatattctgcagaaattggaataagagtccttctacaacgaagacttgtaactgtggatag |
271 |
Q |
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| T |
7888163 |
tactacaagactgtgggcatttttcagtaattgggataagtgtcctcgtacaacaaagtcttgtaactgttgatag |
7888088 |
T |
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